Hb_007576_110

Information

Type -
Description -
Location Contig7576: 90968-101977
Sequence    

Annotation

kegg
ID tcc:TCM_007503
description Endoplasmic reticulum vesicle transporter protein
nr
ID XP_007042992.1
description Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
swissprot
ID Q803I2
description Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1
trembl
ID A0A061E973
description Endoplasmic reticulum vesicle transporter protein OS=Theobroma cacao GN=TCM_007503 PE=4 SV=1
Gene Ontology
ID GO:0005774
description endoplasmic reticulum-golgi intermediate compartment protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57118: 91051-102030 , PASA_asmbl_57119: 93880-102030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_110 0.0 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
2 Hb_000789_310 0.0404213307 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
3 Hb_000366_120 0.0461859762 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
4 Hb_014361_070 0.050964248 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_000190_120 0.0516120336 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
6 Hb_001409_020 0.0546048485 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
7 Hb_002375_010 0.0573617744 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
8 Hb_004195_200 0.0579314213 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
9 Hb_000617_100 0.0585477927 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
10 Hb_000193_190 0.0593284767 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
11 Hb_003680_150 0.060054167 - - srpk, putative [Ricinus communis]
12 Hb_000347_070 0.0607938586 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002823_030 0.061755899 - - -
14 Hb_000030_190 0.0617937803 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
15 Hb_003025_110 0.0626446342 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
16 Hb_000462_060 0.0626727561 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
17 Hb_010618_010 0.0630948507 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_003371_110 0.063145291 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
19 Hb_000029_300 0.0636806072 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
20 Hb_123352_020 0.0637164744 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_110 Hb_007576_110 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_014361_070 Hb_014361_070 Hb_007576_110--Hb_014361_070 Hb_000190_120 Hb_000190_120 Hb_007576_110--Hb_000190_120 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010 Hb_000030_190 Hb_000030_190 Hb_000789_310--Hb_000030_190 Hb_033642_030 Hb_033642_030 Hb_000789_310--Hb_033642_030 Hb_000462_060 Hb_000462_060 Hb_000789_310--Hb_000462_060 Hb_000345_380 Hb_000345_380 Hb_000789_310--Hb_000345_380 Hb_000789_310--Hb_001409_020 Hb_021409_040 Hb_021409_040 Hb_000366_120--Hb_021409_040 Hb_004195_200 Hb_004195_200 Hb_000366_120--Hb_004195_200 Hb_014497_050 Hb_014497_050 Hb_000366_120--Hb_014497_050 Hb_000366_120--Hb_001409_020 Hb_000366_120--Hb_000789_310 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_003371_110 Hb_003371_110 Hb_014361_070--Hb_003371_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_002823_030 Hb_002823_030 Hb_014361_070--Hb_002823_030 Hb_001195_320 Hb_001195_320 Hb_014361_070--Hb_001195_320 Hb_000190_120--Hb_002823_030 Hb_000190_120--Hb_003371_110 Hb_000347_070 Hb_000347_070 Hb_000190_120--Hb_000347_070 Hb_009175_020 Hb_009175_020 Hb_000190_120--Hb_009175_020 Hb_003680_150 Hb_003680_150 Hb_000190_120--Hb_003680_150 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_000390_320 Hb_000390_320 Hb_002375_010--Hb_000390_320 Hb_002375_010--Hb_004195_200 Hb_002375_010--Hb_000347_070 Hb_000617_180 Hb_000617_180 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3873 12.9306 9.104 11.5766 15.9979 16.7732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2621 9.88849 11.1017 12.4092 8.84909

CAGE analysis