Hb_007576_120

Information

Type -
Description -
Location Contig7576: 108221-113717
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID AKE49464.1
description NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57122: 111812-113189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_120 0.0 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
2 Hb_004543_030 0.0573335763 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
3 Hb_034243_020 0.0621958391 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
4 Hb_001493_040 0.0672412526 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
5 Hb_000139_090 0.0707868673 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
6 Hb_005539_090 0.0722222815 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
7 Hb_000012_140 0.072570698 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005496_110 0.0732827481 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
9 Hb_030565_090 0.07673036 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
10 Hb_000960_100 0.0777777781 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
11 Hb_002524_040 0.0781044046 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
12 Hb_000345_150 0.078526891 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
13 Hb_000540_060 0.0792379808 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
14 Hb_000997_030 0.08055419 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
15 Hb_001268_350 0.0808765284 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
16 Hb_002784_110 0.0817306146 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
17 Hb_074969_010 0.0819064534 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
18 Hb_000035_290 0.0849999407 - - RNA recognition motif-containing family protein [Populus trichocarpa]
19 Hb_004480_040 0.0852033561 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
20 Hb_001143_250 0.0855904878 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_120 Hb_007576_120 Hb_004543_030 Hb_004543_030 Hb_007576_120--Hb_004543_030 Hb_034243_020 Hb_034243_020 Hb_007576_120--Hb_034243_020 Hb_001493_040 Hb_001493_040 Hb_007576_120--Hb_001493_040 Hb_000139_090 Hb_000139_090 Hb_007576_120--Hb_000139_090 Hb_005539_090 Hb_005539_090 Hb_007576_120--Hb_005539_090 Hb_000012_140 Hb_000012_140 Hb_007576_120--Hb_000012_140 Hb_004543_030--Hb_034243_020 Hb_002524_040 Hb_002524_040 Hb_004543_030--Hb_002524_040 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_034243_020--Hb_001493_040 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010 Hb_001417_050 Hb_001417_050 Hb_001493_040--Hb_001417_050 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_001493_040--Hb_010315_090 Hb_000160_290 Hb_000160_290 Hb_001493_040--Hb_000160_290 Hb_002422_050 Hb_002422_050 Hb_001493_040--Hb_002422_050 Hb_000174_220 Hb_000174_220 Hb_000139_090--Hb_000174_220 Hb_001247_070 Hb_001247_070 Hb_000139_090--Hb_001247_070 Hb_000139_090--Hb_002524_040 Hb_000002_040 Hb_000002_040 Hb_000139_090--Hb_000002_040 Hb_015807_070 Hb_015807_070 Hb_000139_090--Hb_015807_070 Hb_005539_090--Hb_000012_140 Hb_004483_040 Hb_004483_040 Hb_005539_090--Hb_004483_040 Hb_000977_120 Hb_000977_120 Hb_005539_090--Hb_000977_120 Hb_000321_150 Hb_000321_150 Hb_005539_090--Hb_000321_150 Hb_000960_100 Hb_000960_100 Hb_005539_090--Hb_000960_100 Hb_001143_250 Hb_001143_250 Hb_000012_140--Hb_001143_250 Hb_002022_070 Hb_002022_070 Hb_000012_140--Hb_002022_070 Hb_000012_140--Hb_034243_020 Hb_000012_140--Hb_004543_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.65874 4.31425 1.16934 1.24376 2.9483 4.0232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80278 1.17672 1.89181 2.5053 2.70122

CAGE analysis