Hb_007576_150

Information

Type -
Description -
Location Contig7576: 145238-148225
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12200g
description POPTRDRAFT_751063; pentatricopeptide repeat-containing family protein
nr
ID XP_012065979.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
swissprot
ID Q7Y211
description Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2
trembl
ID A0A067L3Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26670 PE=4 SV=1
Gene Ontology
ID GO:0031425
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57125: 145972-146266 , PASA_asmbl_57126: 146545-146760 , PASA_asmbl_57128: 147385-148097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
2 Hb_000934_020 0.0895890513 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
3 Hb_000189_250 0.1043858661 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
4 Hb_000640_260 0.1190923246 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
5 Hb_003029_140 0.1202355922 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
6 Hb_001890_010 0.1214162159 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_003878_080 0.1260115714 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
8 Hb_000495_080 0.1263655687 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
9 Hb_000684_280 0.1267100935 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
10 Hb_000069_490 0.1288457539 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000997_140 0.1325900465 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
12 Hb_003941_030 0.1335938312 - - Protease ecfE, putative [Ricinus communis]
13 Hb_018043_020 0.1341668402 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
14 Hb_000318_130 0.1342966256 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000676_200 0.1415190288 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
16 Hb_002374_250 0.1433492449 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010757_030 0.144661437 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002660_190 0.1446810024 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
19 Hb_003124_120 0.1447154739 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
20 Hb_015778_060 0.1461485698 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_150 Hb_007576_150 Hb_000934_020 Hb_000934_020 Hb_007576_150--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_007576_150--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_007576_150--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_007576_150--Hb_003029_140 Hb_001890_010 Hb_001890_010 Hb_007576_150--Hb_001890_010 Hb_003878_080 Hb_003878_080 Hb_007576_150--Hb_003878_080 Hb_000934_020--Hb_000189_250 Hb_000934_020--Hb_000640_260 Hb_000934_020--Hb_001890_010 Hb_166127_030 Hb_166127_030 Hb_000934_020--Hb_166127_030 Hb_000069_490 Hb_000069_490 Hb_000934_020--Hb_000069_490 Hb_000189_250--Hb_166127_030 Hb_000189_250--Hb_000640_260 Hb_036790_120 Hb_036790_120 Hb_000189_250--Hb_036790_120 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080 Hb_000640_260--Hb_001890_010 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_000640_260--Hb_166127_030 Hb_000640_260--Hb_003029_140 Hb_018043_020 Hb_018043_020 Hb_003029_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_003029_140--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_003029_140--Hb_008616_040 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_004111_030 Hb_004111_030 Hb_001890_010--Hb_004111_030 Hb_003124_120 Hb_003124_120 Hb_001890_010--Hb_003124_120 Hb_001890_010--Hb_018043_020 Hb_159809_090 Hb_159809_090 Hb_001890_010--Hb_159809_090 Hb_003878_080--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_003878_080--Hb_010757_030 Hb_000676_200 Hb_000676_200 Hb_003878_080--Hb_000676_200 Hb_024714_080 Hb_024714_080 Hb_003878_080--Hb_024714_080 Hb_003878_080--Hb_000934_020 Hb_002282_070 Hb_002282_070 Hb_003878_080--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.445422 1.23532 1.14109 0.640039 0.317118 0.522856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.289839 0.633545 0.846878 0.668812 4.34434

CAGE analysis