Hb_007576_170

Information

Type -
Description -
Location Contig7576: 157015-160590
Sequence    

Annotation

kegg
ID rcu:RCOM_1195940
description hypothetical protein
nr
ID XP_002528138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P53305
description Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM27 PE=1 SV=1
trembl
ID B9SQ69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1195940 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 28s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57130: 157027-160622 , PASA_asmbl_57131: 157059-160626
cDNA
(Sanger)
(ID:Location)		 017_J07.ab1: 157218-160622

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004459_040 0.0581581217 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
3 Hb_000431_070 0.0604254464 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
4 Hb_002798_020 0.0625748955 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
5 Hb_033153_060 0.0643764071 - - Transcription elongation factor, putative [Ricinus communis]
6 Hb_006541_010 0.065426388 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
7 Hb_017225_020 0.0705614588 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
8 Hb_000680_140 0.0709340052 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
9 Hb_001512_080 0.0732223327 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
10 Hb_002110_200 0.0734457686 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_094608_010 0.074284808 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
12 Hb_004055_070 0.0768009153 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
13 Hb_001616_040 0.0772573791 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
14 Hb_007065_010 0.0810072383 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
15 Hb_004127_020 0.0810656454 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
16 Hb_004899_370 0.0829096825 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
17 Hb_000996_140 0.0829591484 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
18 Hb_002676_090 0.0833571877 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
19 Hb_000840_180 0.0833709844 - - protein BOLA2 [Jatropha curcas]
20 Hb_000920_110 0.0837176274 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_170 Hb_007576_170 Hb_004459_040 Hb_004459_040 Hb_007576_170--Hb_004459_040 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_033153_060 Hb_033153_060 Hb_007576_170--Hb_033153_060 Hb_006541_010 Hb_006541_010 Hb_007576_170--Hb_006541_010 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_004459_040--Hb_033153_060 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_002613_020 Hb_002613_020 Hb_000431_070--Hb_002613_020 Hb_000045_310 Hb_000045_310 Hb_000431_070--Hb_000045_310 Hb_001279_080 Hb_001279_080 Hb_000431_070--Hb_001279_080 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_087749_010 Hb_087749_010 Hb_000431_070--Hb_087749_010 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_033153_060--Hb_006541_010 Hb_000042_200 Hb_000042_200 Hb_033153_060--Hb_000042_200 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_027654_050 Hb_027654_050 Hb_017225_020--Hb_027654_050 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_017225_020--Hb_010361_010 Hb_028872_080 Hb_028872_080 Hb_017225_020--Hb_028872_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7036 6.34931 17.9409 16.317 12.9479 20.0322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.4273 50.2111 26.4307 14.8562 19.4257

CAGE analysis