Hb_007576_220

Information

Type -
Description -
Location Contig7576: 221541-229105
Sequence    

Annotation

kegg
ID rcu:RCOM_0196490
description smad nuclear interacting protein, putative
nr
ID XP_012088093.1
description PREDICTED: kanadaptin [Jatropha curcas]
swissprot
ID Q9BWU0
description Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1
trembl
ID A0A067JNE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25614 PE=4 SV=1
Gene Ontology
ID GO:0016020
description kanadaptin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57143: 221774-226788 , PASA_asmbl_57144: 222852-223631 , PASA_asmbl_57145: 227389-229163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_220 0.0 - - PREDICTED: kanadaptin [Jatropha curcas]
2 Hb_009449_090 0.0554934865 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
3 Hb_007576_230 0.068694426 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
4 Hb_155159_010 0.0730416797 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
5 Hb_005539_040 0.0731022259 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
6 Hb_000086_050 0.0743236237 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
7 Hb_002073_280 0.0747689371 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
8 Hb_000227_310 0.0748133246 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
9 Hb_000926_010 0.0765050338 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
10 Hb_002282_060 0.0780158437 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
11 Hb_007193_110 0.0787991669 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
12 Hb_010661_020 0.0840350165 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
13 Hb_012114_050 0.0844289133 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
14 Hb_004032_230 0.0862116052 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
15 Hb_007818_030 0.0870931696 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
16 Hb_000024_120 0.0871752406 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
17 Hb_007283_030 0.0890213454 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
18 Hb_000526_060 0.0901085204 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
19 Hb_000218_020 0.0901989 - - synaptosomal associated protein, putative [Ricinus communis]
20 Hb_000300_250 0.0903080874 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007576_220 Hb_007576_220 Hb_009449_090 Hb_009449_090 Hb_007576_220--Hb_009449_090 Hb_007576_230 Hb_007576_230 Hb_007576_220--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_007576_220--Hb_155159_010 Hb_005539_040 Hb_005539_040 Hb_007576_220--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_007576_220--Hb_000086_050 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280 Hb_009449_090--Hb_005539_040 Hb_009449_090--Hb_000086_050 Hb_002571_030 Hb_002571_030 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_007283_030 Hb_007283_030 Hb_009449_090--Hb_007283_030 Hb_007818_040 Hb_007818_040 Hb_007576_230--Hb_007818_040 Hb_007576_230--Hb_007283_030 Hb_007576_230--Hb_000086_050 Hb_007576_230--Hb_009449_090 Hb_000300_250 Hb_000300_250 Hb_007576_230--Hb_000300_250 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_155159_010--Hb_007283_030 Hb_000703_130 Hb_000703_130 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020 Hb_005539_040--Hb_000300_250 Hb_005539_040--Hb_010661_020 Hb_005539_040--Hb_011920_020 Hb_001221_090 Hb_001221_090 Hb_005539_040--Hb_001221_090 Hb_000086_050--Hb_007283_030 Hb_002687_090 Hb_002687_090 Hb_000086_050--Hb_002687_090 Hb_000086_050--Hb_155159_010 Hb_002073_280--Hb_002282_060 Hb_013749_020 Hb_013749_020 Hb_002073_280--Hb_013749_020 Hb_002073_280--Hb_155159_010 Hb_000526_060 Hb_000526_060 Hb_002073_280--Hb_000526_060 Hb_000896_060 Hb_000896_060 Hb_002073_280--Hb_000896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3664 39.8373 22.9196 10.0913 22.6854 13.6335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36073 6.10822 6.73988 16.0365 14.9043

CAGE analysis