Hb_007586_010

Information

Type -
Description -
Location Contig7586: 9562-12090
Sequence    

Annotation

kegg
ID pda:103715854
description uncharacterized LOC103715854
nr
ID XP_011025080.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID A0A087PV76
description TonB-dependent receptor OS=Acetobacter malorum GN=AmDm5_0694 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007586_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
2 Hb_123056_010 0.0439082518 - - -
3 Hb_000894_050 0.0531185813 - - -
4 Hb_096257_010 0.0538629101 - - -
5 Hb_180003_010 0.0630461482 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
6 Hb_030449_010 0.0641212426 - - -
7 Hb_021470_010 0.0704397461 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_004409_010 0.0744917778 - - -
9 Hb_141990_060 0.0768500113 - - -
10 Hb_001703_100 0.0775728512 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
11 Hb_003206_040 0.0777407871 - - Auxin efflux carrier component, putative [Ricinus communis]
12 Hb_002269_010 0.084252003 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
13 Hb_005269_010 0.1153482937 - - -
14 Hb_010531_060 0.1690287471 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
15 Hb_011113_020 0.2118770303 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
16 Hb_023024_010 0.2140038825 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
17 Hb_085922_010 0.2508820271 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_178817_010 0.2610642598 - - protease [Gossypium hirsutum]
19 Hb_003673_030 0.2701240028 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
20 Hb_000188_030 0.2898637524 - - carboxylic ester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007586_010 Hb_007586_010 Hb_123056_010 Hb_123056_010 Hb_007586_010--Hb_123056_010 Hb_000894_050 Hb_000894_050 Hb_007586_010--Hb_000894_050 Hb_096257_010 Hb_096257_010 Hb_007586_010--Hb_096257_010 Hb_180003_010 Hb_180003_010 Hb_007586_010--Hb_180003_010 Hb_030449_010 Hb_030449_010 Hb_007586_010--Hb_030449_010 Hb_021470_010 Hb_021470_010 Hb_007586_010--Hb_021470_010 Hb_001703_100 Hb_001703_100 Hb_123056_010--Hb_001703_100 Hb_002269_010 Hb_002269_010 Hb_123056_010--Hb_002269_010 Hb_005269_010 Hb_005269_010 Hb_123056_010--Hb_005269_010 Hb_123056_010--Hb_000894_050 Hb_123056_010--Hb_096257_010 Hb_000894_050--Hb_096257_010 Hb_000894_050--Hb_180003_010 Hb_000894_050--Hb_030449_010 Hb_000894_050--Hb_021470_010 Hb_004409_010 Hb_004409_010 Hb_000894_050--Hb_004409_010 Hb_141990_060 Hb_141990_060 Hb_000894_050--Hb_141990_060 Hb_096257_010--Hb_180003_010 Hb_096257_010--Hb_030449_010 Hb_096257_010--Hb_021470_010 Hb_096257_010--Hb_004409_010 Hb_096257_010--Hb_141990_060 Hb_180003_010--Hb_030449_010 Hb_180003_010--Hb_021470_010 Hb_180003_010--Hb_004409_010 Hb_180003_010--Hb_141990_060 Hb_030449_010--Hb_021470_010 Hb_030449_010--Hb_004409_010 Hb_030449_010--Hb_141990_060 Hb_021470_010--Hb_004409_010 Hb_021470_010--Hb_141990_060 Hb_003206_040 Hb_003206_040 Hb_021470_010--Hb_003206_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0256242 0.0295881 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis