Hb_007586_020

Information

Type -
Description -
Location Contig7586: 18396-22847
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007586_020 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_004888_050 0.001611172 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_157349_010 0.0242160865 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
4 Hb_001274_010 0.0331290734 - - -
5 Hb_000085_110 0.0385197416 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
6 Hb_000245_240 0.039457004 - - -
7 Hb_088224_010 0.040700642 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
8 Hb_000368_130 0.0454153347 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000055_100 0.0461856261 - - polyprotein [Oryza australiensis]
10 Hb_000483_170 0.0574179503 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
11 Hb_073171_060 0.0590105907 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
12 Hb_000589_430 0.0698131486 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
13 Hb_010272_020 0.0706425063 - - hypothetical protein VITISV_030841 [Vitis vinifera]
14 Hb_001792_010 0.0929210143 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
15 Hb_002641_150 0.0936816455 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
16 Hb_001998_040 0.0947531263 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002260_230 0.0952660147 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
18 Hb_150498_010 0.0989370106 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
19 Hb_000463_110 0.1032948154 - - -
20 Hb_002686_370 0.1035242183 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]

Gene co-expression network

sample Hb_007586_020 Hb_007586_020 Hb_004888_050 Hb_004888_050 Hb_007586_020--Hb_004888_050 Hb_157349_010 Hb_157349_010 Hb_007586_020--Hb_157349_010 Hb_001274_010 Hb_001274_010 Hb_007586_020--Hb_001274_010 Hb_000085_110 Hb_000085_110 Hb_007586_020--Hb_000085_110 Hb_000245_240 Hb_000245_240 Hb_007586_020--Hb_000245_240 Hb_088224_010 Hb_088224_010 Hb_007586_020--Hb_088224_010 Hb_004888_050--Hb_157349_010 Hb_004888_050--Hb_001274_010 Hb_004888_050--Hb_000085_110 Hb_004888_050--Hb_000245_240 Hb_004888_050--Hb_088224_010 Hb_157349_010--Hb_001274_010 Hb_000483_170 Hb_000483_170 Hb_157349_010--Hb_000483_170 Hb_000589_430 Hb_000589_430 Hb_157349_010--Hb_000589_430 Hb_157349_010--Hb_000085_110 Hb_001274_010--Hb_000483_170 Hb_001274_010--Hb_000589_430 Hb_001792_010 Hb_001792_010 Hb_001274_010--Hb_001792_010 Hb_000085_110--Hb_000245_240 Hb_000085_110--Hb_088224_010 Hb_000368_130 Hb_000368_130 Hb_000085_110--Hb_000368_130 Hb_000055_100 Hb_000055_100 Hb_000085_110--Hb_000055_100 Hb_073171_060 Hb_073171_060 Hb_000085_110--Hb_073171_060 Hb_010272_020 Hb_010272_020 Hb_000085_110--Hb_010272_020 Hb_000245_240--Hb_088224_010 Hb_000245_240--Hb_000368_130 Hb_000245_240--Hb_000055_100 Hb_000245_240--Hb_073171_060 Hb_000245_240--Hb_010272_020 Hb_088224_010--Hb_000368_130 Hb_088224_010--Hb_000055_100 Hb_088224_010--Hb_073171_060 Hb_088224_010--Hb_010272_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0128229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00662417 0

CAGE analysis