Hb_007586_030

Information

Type -
Description -
Location Contig7586: 33876-35819
Sequence    

Annotation

kegg
ID rcu:RCOM_0813650
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012078928.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQE5
description Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2
trembl
ID B9RYJ0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0813650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57162: 34819-35116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007586_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
2 Hb_000005_380 0.0495845179 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
3 Hb_000244_250 0.0592242889 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
4 Hb_000977_180 0.0622214279 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
5 Hb_006649_060 0.0630356336 - - conserved hypothetical protein [Ricinus communis]
6 Hb_123777_030 0.0635652103 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
7 Hb_002150_030 0.0643178568 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
8 Hb_007757_110 0.069400548 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_005977_090 0.0702511806 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
10 Hb_001736_040 0.0702854514 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
11 Hb_001797_050 0.0706156187 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
12 Hb_000390_070 0.0725728308 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
13 Hb_000661_050 0.0743136984 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
14 Hb_004452_100 0.0755298588 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
15 Hb_009411_010 0.0799614313 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
16 Hb_028487_110 0.081133229 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
17 Hb_001541_020 0.0822348614 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
18 Hb_001439_140 0.0839761176 - - pattern formation protein, putative [Ricinus communis]
19 Hb_004724_060 0.0851385682 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
20 Hb_000514_060 0.0855395879 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007586_030 Hb_007586_030 Hb_000005_380 Hb_000005_380 Hb_007586_030--Hb_000005_380 Hb_000244_250 Hb_000244_250 Hb_007586_030--Hb_000244_250 Hb_000977_180 Hb_000977_180 Hb_007586_030--Hb_000977_180 Hb_006649_060 Hb_006649_060 Hb_007586_030--Hb_006649_060 Hb_123777_030 Hb_123777_030 Hb_007586_030--Hb_123777_030 Hb_002150_030 Hb_002150_030 Hb_007586_030--Hb_002150_030 Hb_000005_380--Hb_000244_250 Hb_000005_380--Hb_123777_030 Hb_011318_010 Hb_011318_010 Hb_000005_380--Hb_011318_010 Hb_005977_090 Hb_005977_090 Hb_000005_380--Hb_005977_090 Hb_004055_040 Hb_004055_040 Hb_000005_380--Hb_004055_040 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_000977_180--Hb_002150_030 Hb_000977_180--Hb_123777_030 Hb_005214_160 Hb_005214_160 Hb_000977_180--Hb_005214_160 Hb_000977_180--Hb_005977_090 Hb_007364_010 Hb_007364_010 Hb_000977_180--Hb_007364_010 Hb_006649_060--Hb_002150_030 Hb_006649_060--Hb_001541_020 Hb_000031_050 Hb_000031_050 Hb_006649_060--Hb_000031_050 Hb_006649_060--Hb_022408_010 Hb_183963_030 Hb_183963_030 Hb_006649_060--Hb_183963_030 Hb_003406_040 Hb_003406_040 Hb_123777_030--Hb_003406_040 Hb_001871_040 Hb_001871_040 Hb_123777_030--Hb_001871_040 Hb_123777_030--Hb_004055_040 Hb_007108_030 Hb_007108_030 Hb_002150_030--Hb_007108_030 Hb_001797_050 Hb_001797_050 Hb_002150_030--Hb_001797_050 Hb_009411_010 Hb_009411_010 Hb_002150_030--Hb_009411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.7879 26.7129 7.03735 12.6446 48.2385 51.7149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5977 18.8763 38.615 21.2156 23.5668

CAGE analysis