Hb_007590_020

Information

Type -
Description -
Location Contig7590: 10026-15366
Sequence    

Annotation

kegg
ID rcu:RCOM_0612100
description DNA damage-binding protein, putative
nr
ID XP_012067652.1
description PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
swissprot
ID Q6NQ88
description Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana GN=DDB2 PE=1 SV=1
trembl
ID A0A067LDL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08474 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein damaged dna-binding 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57165: 10077-15400 , PASA_asmbl_57166: 14260-14370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007590_020 0.0 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
2 Hb_004837_180 0.0466676805 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
3 Hb_005867_070 0.0539576411 - - DNA binding protein, putative [Ricinus communis]
4 Hb_001089_030 0.0584005894 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
5 Hb_004236_050 0.0627579485 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
6 Hb_005730_040 0.0637032202 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
7 Hb_001225_040 0.0659279572 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
8 Hb_000645_170 0.0665636596 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001720_040 0.0665645607 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002217_110 0.0689545607 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
11 Hb_001153_210 0.0712852207 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
12 Hb_005489_020 0.0720574166 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003929_280 0.0723602361 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
14 Hb_000329_370 0.0732699985 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
15 Hb_011930_020 0.0758662716 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
16 Hb_000317_050 0.0770358045 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
17 Hb_008059_010 0.0770659241 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
18 Hb_000340_400 0.0776695822 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
19 Hb_002986_100 0.0781688037 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
20 Hb_001226_150 0.0794610413 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007590_020 Hb_007590_020 Hb_004837_180 Hb_004837_180 Hb_007590_020--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_007590_020--Hb_005867_070 Hb_001089_030 Hb_001089_030 Hb_007590_020--Hb_001089_030 Hb_004236_050 Hb_004236_050 Hb_007590_020--Hb_004236_050 Hb_005730_040 Hb_005730_040 Hb_007590_020--Hb_005730_040 Hb_001225_040 Hb_001225_040 Hb_007590_020--Hb_001225_040 Hb_004837_180--Hb_005867_070 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004837_180--Hb_004236_050 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_005867_070--Hb_005730_040 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_000710_040 Hb_000710_040 Hb_001089_030--Hb_000710_040 Hb_000227_220 Hb_000227_220 Hb_001089_030--Hb_000227_220 Hb_001720_040 Hb_001720_040 Hb_001089_030--Hb_001720_040 Hb_004020_040 Hb_004020_040 Hb_001089_030--Hb_004020_040 Hb_001089_030--Hb_004837_180 Hb_004236_050--Hb_003929_280 Hb_000645_170 Hb_000645_170 Hb_004236_050--Hb_000645_170 Hb_003927_040 Hb_003927_040 Hb_004236_050--Hb_003927_040 Hb_012305_030 Hb_012305_030 Hb_004236_050--Hb_012305_030 Hb_000976_140 Hb_000976_140 Hb_005730_040--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_005730_040--Hb_002849_130 Hb_000708_030 Hb_000708_030 Hb_005730_040--Hb_000708_030 Hb_000170_090 Hb_000170_090 Hb_005730_040--Hb_000170_090 Hb_005730_040--Hb_001225_040 Hb_005653_090 Hb_005653_090 Hb_001225_040--Hb_005653_090 Hb_006520_040 Hb_006520_040 Hb_001225_040--Hb_006520_040 Hb_003030_060 Hb_003030_060 Hb_001225_040--Hb_003030_060 Hb_011537_050 Hb_011537_050 Hb_001225_040--Hb_011537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0671 22.1855 20.0381 14.0927 18.0667 16.9292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3077 17.0586 10.7016 13.5183 19.9962

CAGE analysis