Hb_007590_100

Information

Type -
Description -
Location Contig7590: 60516-78438
Sequence    

Annotation

kegg
ID rcu:RCOM_0612550
description 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative (EC:3.1.4.11)
nr
ID XP_012067517.1
description PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
swissprot
ID Q944C1
description Phosphoinositide phospholipase C 4 OS=Arabidopsis thaliana GN=PLC4 PE=2 SV=2
trembl
ID A0A067LNP3
description Phosphoinositide phospholipase C OS=Jatropha curcas GN=JCGZ_08462 PE=4 SV=1
Gene Ontology
ID GO:0004435
description phosphoinositide phospholipase c 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57174: 62409-62741 , PASA_asmbl_57175: 65044-65228 , PASA_asmbl_57176: 75180-75732 , PASA_asmbl_57177: 75515-76217 , PASA_asmbl_57178: 76241-77521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007590_100 0.0 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
2 Hb_006615_230 0.1137583477 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_187959_010 0.1151192817 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
4 Hb_002495_030 0.1151995396 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
5 Hb_004032_110 0.1274036085 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
6 Hb_003052_080 0.1311006087 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
7 Hb_098795_030 0.1339311027 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
8 Hb_001976_020 0.1345272266 - - conserved hypothetical protein [Ricinus communis]
9 Hb_134014_010 0.1350738575 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
10 Hb_003470_110 0.1357592358 - - unnamed protein product [Vitis vinifera]
11 Hb_007894_070 0.1380421324 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
12 Hb_007416_290 0.1393321269 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
13 Hb_189003_070 0.1426205114 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
14 Hb_000959_120 0.1427196368 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
15 Hb_003030_010 0.1440219419 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
16 Hb_158092_040 0.1447718522 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
17 Hb_034507_010 0.1454855319 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
18 Hb_006414_010 0.1463681986 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
19 Hb_029223_040 0.1468430278 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
20 Hb_007134_030 0.1471129288 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]

Gene co-expression network

sample Hb_007590_100 Hb_007590_100 Hb_006615_230 Hb_006615_230 Hb_007590_100--Hb_006615_230 Hb_187959_010 Hb_187959_010 Hb_007590_100--Hb_187959_010 Hb_002495_030 Hb_002495_030 Hb_007590_100--Hb_002495_030 Hb_004032_110 Hb_004032_110 Hb_007590_100--Hb_004032_110 Hb_003052_080 Hb_003052_080 Hb_007590_100--Hb_003052_080 Hb_098795_030 Hb_098795_030 Hb_007590_100--Hb_098795_030 Hb_134014_010 Hb_134014_010 Hb_006615_230--Hb_134014_010 Hb_189003_070 Hb_189003_070 Hb_006615_230--Hb_189003_070 Hb_006615_230--Hb_098795_030 Hb_001119_070 Hb_001119_070 Hb_006615_230--Hb_001119_070 Hb_158092_040 Hb_158092_040 Hb_006615_230--Hb_158092_040 Hb_006615_230--Hb_002495_030 Hb_003030_010 Hb_003030_010 Hb_187959_010--Hb_003030_010 Hb_001054_060 Hb_001054_060 Hb_187959_010--Hb_001054_060 Hb_004007_200 Hb_004007_200 Hb_187959_010--Hb_004007_200 Hb_006414_010 Hb_006414_010 Hb_187959_010--Hb_006414_010 Hb_007134_030 Hb_007134_030 Hb_187959_010--Hb_007134_030 Hb_002495_030--Hb_098795_030 Hb_000580_110 Hb_000580_110 Hb_002495_030--Hb_000580_110 Hb_001008_080 Hb_001008_080 Hb_002495_030--Hb_001008_080 Hb_002495_030--Hb_003052_080 Hb_002949_020 Hb_002949_020 Hb_004032_110--Hb_002949_020 Hb_001439_010 Hb_001439_010 Hb_004032_110--Hb_001439_010 Hb_036388_010 Hb_036388_010 Hb_004032_110--Hb_036388_010 Hb_002397_050 Hb_002397_050 Hb_004032_110--Hb_002397_050 Hb_004032_110--Hb_007134_030 Hb_004957_050 Hb_004957_050 Hb_003052_080--Hb_004957_050 Hb_000309_070 Hb_000309_070 Hb_003052_080--Hb_000309_070 Hb_001404_070 Hb_001404_070 Hb_003052_080--Hb_001404_070 Hb_002750_040 Hb_002750_040 Hb_003052_080--Hb_002750_040 Hb_003470_110 Hb_003470_110 Hb_098795_030--Hb_003470_110 Hb_002097_080 Hb_002097_080 Hb_098795_030--Hb_002097_080 Hb_001976_020 Hb_001976_020 Hb_098795_030--Hb_001976_020 Hb_002685_220 Hb_002685_220 Hb_098795_030--Hb_002685_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0177094 1.00709 1.15097 3.93639 0.0356937 0.0444397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0995416 0.259124 0.197437 1.62822 2.46294

CAGE analysis