Hb_007592_030

Information

Type -
Description -
Location Contig7592: 20746-25046
Sequence    

Annotation

kegg
ID rcu:RCOM_0771530
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002530371.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q93Z08
description Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2
trembl
ID B9SWK2
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0771530 PE=3 SV=1
Gene Ontology
ID GO:0009506
description glucan endo- -beta-glucosidase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57183: 20749-24684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007592_030 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_004994_040 0.0622985407 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
3 Hb_003813_040 0.0653167725 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
4 Hb_000445_050 0.0655761564 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
5 Hb_058999_030 0.0701087174 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
6 Hb_002398_030 0.073626751 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_017700_010 0.0752329853 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
8 Hb_011174_090 0.0757390717 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
9 Hb_002078_020 0.0758375249 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
10 Hb_000523_050 0.0761229957 - - microsomal glutathione s-transferase, putative [Ricinus communis]
11 Hb_000777_050 0.0787448309 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
12 Hb_028308_010 0.0804298347 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
13 Hb_001047_220 0.0809975073 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
14 Hb_004007_220 0.0813828455 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
15 Hb_000236_380 0.0815312414 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
16 Hb_008120_030 0.0835543371 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
17 Hb_001195_560 0.0843709723 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
18 Hb_002942_060 0.0857539569 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_002876_320 0.0863158233 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
20 Hb_033642_030 0.0878964025 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007592_030 Hb_007592_030 Hb_004994_040 Hb_004994_040 Hb_007592_030--Hb_004994_040 Hb_003813_040 Hb_003813_040 Hb_007592_030--Hb_003813_040 Hb_000445_050 Hb_000445_050 Hb_007592_030--Hb_000445_050 Hb_058999_030 Hb_058999_030 Hb_007592_030--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_007592_030--Hb_002398_030 Hb_017700_010 Hb_017700_010 Hb_007592_030--Hb_017700_010 Hb_011174_090 Hb_011174_090 Hb_004994_040--Hb_011174_090 Hb_000618_030 Hb_000618_030 Hb_004994_040--Hb_000618_030 Hb_002304_090 Hb_002304_090 Hb_004994_040--Hb_002304_090 Hb_001444_010 Hb_001444_010 Hb_004994_040--Hb_001444_010 Hb_009627_010 Hb_009627_010 Hb_004994_040--Hb_009627_010 Hb_000189_330 Hb_000189_330 Hb_003813_040--Hb_000189_330 Hb_001377_320 Hb_001377_320 Hb_003813_040--Hb_001377_320 Hb_002686_250 Hb_002686_250 Hb_003813_040--Hb_002686_250 Hb_002078_020 Hb_002078_020 Hb_003813_040--Hb_002078_020 Hb_000777_050 Hb_000777_050 Hb_003813_040--Hb_000777_050 Hb_000445_050--Hb_002398_030 Hb_008120_030 Hb_008120_030 Hb_000445_050--Hb_008120_030 Hb_009049_020 Hb_009049_020 Hb_000445_050--Hb_009049_020 Hb_002942_060 Hb_002942_060 Hb_000445_050--Hb_002942_060 Hb_000445_050--Hb_058999_030 Hb_058999_030--Hb_002398_030 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_058999_030--Hb_017700_010 Hb_003549_090 Hb_003549_090 Hb_058999_030--Hb_003549_090 Hb_000208_260 Hb_000208_260 Hb_058999_030--Hb_000208_260 Hb_002398_030--Hb_008120_030 Hb_002398_030--Hb_003549_090 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_001047_220 Hb_001047_220 Hb_017700_010--Hb_001047_220 Hb_003964_070 Hb_003964_070 Hb_017700_010--Hb_003964_070 Hb_000101_380 Hb_000101_380 Hb_017700_010--Hb_000101_380 Hb_000313_260 Hb_000313_260 Hb_017700_010--Hb_000313_260 Hb_003018_130 Hb_003018_130 Hb_017700_010--Hb_003018_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2604 5.96929 9.67005 10.0822 13.6737 13.5051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.42276 4.34168 9.04861 6.41346 5.23893

CAGE analysis