Hb_007594_030

Information

Type -
Description -
Location Contig7594: 15876-16612
Sequence    

Annotation

kegg
ID rcu:RCOM_1612590
description copper ion binding protein, putative
nr
ID XP_012083535.1
description PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
swissprot
ID Q41001
description Blue copper protein OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067K8Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14496 PE=4 SV=1
Gene Ontology
ID GO:0009055
description cucumber peeling cupredoxin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57187: 15494-16808 , PASA_asmbl_57188: 15494-16571
cDNA
(Sanger)
(ID:Location)		 036_E05r.ab1: 15494-16262

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007594_030 0.0 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
2 Hb_007951_060 0.0786503595 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_033843_010 0.0797067247 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
4 Hb_000451_010 0.0811891109 - - secretory carrier membrane protein, putative [Ricinus communis]
5 Hb_000327_120 0.0865005121 - - FGFR1 oncogene partner, putative [Ricinus communis]
6 Hb_001439_150 0.0866211581 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
7 Hb_002506_020 0.0881371158 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
8 Hb_002685_140 0.0882552774 - - PREDICTED: membrin-11 [Jatropha curcas]
9 Hb_010172_080 0.0885557356 - - acetylglucosaminyltransferase, putative [Ricinus communis]
10 Hb_001006_170 0.0885845004 - - Endonuclease V, putative [Ricinus communis]
11 Hb_000436_070 0.0886723118 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
12 Hb_000085_180 0.0893095411 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
13 Hb_001579_030 0.0902758875 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
14 Hb_003417_020 0.0944946305 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
15 Hb_000620_010 0.0956569662 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
16 Hb_032208_090 0.0961039051 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
17 Hb_001252_100 0.0962909614 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
18 Hb_025645_010 0.0973184747 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
19 Hb_000618_040 0.0993458408 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
20 Hb_000175_460 0.0993915267 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007594_030 Hb_007594_030 Hb_007951_060 Hb_007951_060 Hb_007594_030--Hb_007951_060 Hb_033843_010 Hb_033843_010 Hb_007594_030--Hb_033843_010 Hb_000451_010 Hb_000451_010 Hb_007594_030--Hb_000451_010 Hb_000327_120 Hb_000327_120 Hb_007594_030--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_007594_030--Hb_001439_150 Hb_002506_020 Hb_002506_020 Hb_007594_030--Hb_002506_020 Hb_001305_010 Hb_001305_010 Hb_007951_060--Hb_001305_010 Hb_007951_060--Hb_000327_120 Hb_000926_280 Hb_000926_280 Hb_007951_060--Hb_000926_280 Hb_007951_060--Hb_001439_150 Hb_003417_020 Hb_003417_020 Hb_007951_060--Hb_003417_020 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_001006_170 Hb_001006_170 Hb_033843_010--Hb_001006_170 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040 Hb_000618_040 Hb_000618_040 Hb_000451_010--Hb_000618_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_004907_080 Hb_004907_080 Hb_000451_010--Hb_004907_080 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030 Hb_003195_070 Hb_003195_070 Hb_002506_020--Hb_003195_070 Hb_000025_140 Hb_000025_140 Hb_002506_020--Hb_000025_140 Hb_002506_020--Hb_000451_010 Hb_000395_170 Hb_000395_170 Hb_002506_020--Hb_000395_170 Hb_048937_040 Hb_048937_040 Hb_002506_020--Hb_048937_040 Hb_002506_020--Hb_007904_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2397 8.99131 14.4715 19.0682 28.224 21.8841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1403 20.7146 26.9185 10.3556 5.10703

CAGE analysis