Hb_007594_080

Information

Type -
Description -
Location Contig7594: 46992-52849
Sequence    

Annotation

kegg
ID vvi:100252372
description polygalacturonate 4-alpha-galacturonosyltransferase
nr
ID XP_012083520.1
description PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
swissprot
ID Q9LE59
description Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1
trembl
ID A0A067K8Z3
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_14486 PE=3 SV=1
Gene Ontology
ID GO:0047262
description polygalacturonate 4-alpha-galacturonosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57191: 46914-52865 , PASA_asmbl_57192: 46914-52865 , PASA_asmbl_57193: 46914-52630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007594_080 0.0 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
2 Hb_001279_020 0.0873725912 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
3 Hb_010620_050 0.088430134 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
4 Hb_001663_130 0.0890095606 - - acyl-CoA thioesterase, putative [Ricinus communis]
5 Hb_000302_190 0.0911171761 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
6 Hb_000529_130 0.0918763266 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
7 Hb_001689_050 0.0923040433 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
8 Hb_001279_090 0.0936728566 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
9 Hb_004158_050 0.0953132723 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
10 Hb_000562_070 0.0966098593 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
11 Hb_004907_090 0.097400989 - - ATP binding protein, putative [Ricinus communis]
12 Hb_012779_080 0.1016653311 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
13 Hb_002447_050 0.1022140576 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_003683_030 0.1031493454 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
15 Hb_003175_070 0.1036439496 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
16 Hb_001160_110 0.1040047412 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
17 Hb_001396_020 0.1040923908 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_003687_080 0.1044963485 - - PREDICTED: casein kinase I-like [Jatropha curcas]
19 Hb_003849_160 0.1046651168 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
20 Hb_001021_210 0.1054234121 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007594_080 Hb_007594_080 Hb_001279_020 Hb_001279_020 Hb_007594_080--Hb_001279_020 Hb_010620_050 Hb_010620_050 Hb_007594_080--Hb_010620_050 Hb_001663_130 Hb_001663_130 Hb_007594_080--Hb_001663_130 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_001279_020--Hb_000529_130 Hb_002107_050 Hb_002107_050 Hb_010620_050--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_010620_050--Hb_012779_080 Hb_003071_030 Hb_003071_030 Hb_010620_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_138585_030 Hb_138585_030 Hb_010620_050--Hb_138585_030 Hb_009288_040 Hb_009288_040 Hb_010620_050--Hb_009288_040 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_001789_160 Hb_001789_160 Hb_000302_190--Hb_001789_160 Hb_000302_190--Hb_003071_030 Hb_000302_190--Hb_001279_090 Hb_000224_220 Hb_000224_220 Hb_000302_190--Hb_000224_220 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000529_130--Hb_000562_070 Hb_000529_130--Hb_029552_020 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_001250_040 Hb_001250_040 Hb_001689_050--Hb_001250_040 Hb_003683_030 Hb_003683_030 Hb_001689_050--Hb_003683_030 Hb_001689_050--Hb_003894_060 Hb_004837_210 Hb_004837_210 Hb_001689_050--Hb_004837_210 Hb_001953_100 Hb_001953_100 Hb_001689_050--Hb_001953_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.97388 12.0384 34.9837 20.2345 9.48348 7.80316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.5827 3.00136 4.28749 6.89307 26.1085

CAGE analysis