Hb_007594_090

Information

Type -
Description -
Location Contig7594: 57789-60903
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15280g
description POPTRDRAFT_552094; hypothetical protein
nr
ID XP_012083519.1
description PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
swissprot
ID O64644
description Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1
trembl
ID E6NU26
description JHL05D22.7 protein OS=Jatropha curcas GN=JHL05D22.7 PE=4 SV=1
Gene Ontology
ID GO:0005730
description histone deacetylase complex subunit sap18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57195: 57781-60722
cDNA
(Sanger)
(ID:Location)		 008_M03.ab1: 57932-60674 , 018_F18.ab1: 57807-60674

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007594_090 0.0 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
2 Hb_002539_090 0.0805516302 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
3 Hb_000672_120 0.0842047635 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
4 Hb_000975_110 0.084838496 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
5 Hb_004336_050 0.0939673187 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
6 Hb_000751_130 0.0952437388 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
7 Hb_003561_030 0.0957413988 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
8 Hb_000722_040 0.096490462 - - -
9 Hb_000172_030 0.0975785637 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
10 Hb_000024_030 0.0980920675 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
11 Hb_180301_010 0.0988486284 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
12 Hb_000224_120 0.0996187959 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
13 Hb_000364_020 0.102649081 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
14 Hb_130291_010 0.1046398546 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
15 Hb_100777_010 0.1048163547 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
16 Hb_001754_010 0.105018724 - - translationally controlled tumor protein [Hevea brasiliensis]
17 Hb_011161_050 0.1055838461 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
18 Hb_008511_110 0.1092766635 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
19 Hb_010812_010 0.1105041634 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
20 Hb_001173_040 0.1135826929 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_007594_090 Hb_007594_090 Hb_002539_090 Hb_002539_090 Hb_007594_090--Hb_002539_090 Hb_000672_120 Hb_000672_120 Hb_007594_090--Hb_000672_120 Hb_000975_110 Hb_000975_110 Hb_007594_090--Hb_000975_110 Hb_004336_050 Hb_004336_050 Hb_007594_090--Hb_004336_050 Hb_000751_130 Hb_000751_130 Hb_007594_090--Hb_000751_130 Hb_003561_030 Hb_003561_030 Hb_007594_090--Hb_003561_030 Hb_001258_080 Hb_001258_080 Hb_002539_090--Hb_001258_080 Hb_002539_090--Hb_000751_130 Hb_001173_040 Hb_001173_040 Hb_002539_090--Hb_001173_040 Hb_001357_080 Hb_001357_080 Hb_002539_090--Hb_001357_080 Hb_000172_030 Hb_000172_030 Hb_002539_090--Hb_000172_030 Hb_000672_120--Hb_004336_050 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_005588_070 Hb_005588_070 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090 Hb_000024_030 Hb_000024_030 Hb_000975_110--Hb_000024_030 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_000975_110--Hb_003561_030 Hb_000975_110--Hb_001307_090 Hb_001433_050 Hb_001433_050 Hb_000975_110--Hb_001433_050 Hb_004374_140 Hb_004374_140 Hb_004336_050--Hb_004374_140 Hb_180301_010 Hb_180301_010 Hb_004336_050--Hb_180301_010 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_004336_050--Hb_001307_090 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000751_130--Hb_004032_100 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000751_130--Hb_000172_030 Hb_003561_030--Hb_000722_040 Hb_003561_030--Hb_011161_050 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_000367_210 Hb_000367_210 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.453 36.3581 16.696 116.213 66.8075 294.04
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
346.315 360.191 271.267 87.1444 41.2468

CAGE analysis