Hb_007594_100

Information

Type transcription factor
Description TF Family: MIKC
Location Contig7594: 69640-77563
Sequence    

Annotation

kegg
ID rcu:RCOM_1612950
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002511765.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q6EU39
description MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1
trembl
ID B9RDH6
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1612950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007594_100 0.0 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
2 Hb_005527_080 0.1975768693 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
3 Hb_000003_150 0.1984995282 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
4 Hb_001195_120 0.2288661755 - - oxidoreductase, putative [Ricinus communis]
5 Hb_000789_100 0.2648504183 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
6 Hb_000984_250 0.2654752179 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
7 Hb_001675_120 0.27203135 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
8 Hb_001865_040 0.2818238582 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_000169_190 0.2825304487 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
10 Hb_000297_110 0.2836236277 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
11 Hb_003680_110 0.2851744927 - - zinc finger protein, putative [Ricinus communis]
12 Hb_006915_020 0.2855109864 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
13 Hb_027402_090 0.2868028382 - - endonuclease, putative [Ricinus communis]
14 Hb_003177_010 0.2870588297 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
15 Hb_000416_050 0.2888348873 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
16 Hb_007919_080 0.2899093392 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
17 Hb_001882_040 0.2910409262 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
18 Hb_007083_010 0.2919031141 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
19 Hb_000265_220 0.2920435811 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
20 Hb_004800_150 0.2923798486 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_007594_100 Hb_007594_100 Hb_005527_080 Hb_005527_080 Hb_007594_100--Hb_005527_080 Hb_000003_150 Hb_000003_150 Hb_007594_100--Hb_000003_150 Hb_001195_120 Hb_001195_120 Hb_007594_100--Hb_001195_120 Hb_000789_100 Hb_000789_100 Hb_007594_100--Hb_000789_100 Hb_000984_250 Hb_000984_250 Hb_007594_100--Hb_000984_250 Hb_001675_120 Hb_001675_120 Hb_007594_100--Hb_001675_120 Hb_000260_140 Hb_000260_140 Hb_005527_080--Hb_000260_140 Hb_149838_010 Hb_149838_010 Hb_005527_080--Hb_149838_010 Hb_002783_020 Hb_002783_020 Hb_005527_080--Hb_002783_020 Hb_002708_020 Hb_002708_020 Hb_005527_080--Hb_002708_020 Hb_054436_010 Hb_054436_010 Hb_005527_080--Hb_054436_010 Hb_027402_090 Hb_027402_090 Hb_005527_080--Hb_027402_090 Hb_000169_190 Hb_000169_190 Hb_000003_150--Hb_000169_190 Hb_012184_050 Hb_012184_050 Hb_000003_150--Hb_012184_050 Hb_007083_010 Hb_007083_010 Hb_000003_150--Hb_007083_010 Hb_000152_670 Hb_000152_670 Hb_000003_150--Hb_000152_670 Hb_009693_030 Hb_009693_030 Hb_000003_150--Hb_009693_030 Hb_114984_010 Hb_114984_010 Hb_000003_150--Hb_114984_010 Hb_028207_020 Hb_028207_020 Hb_001195_120--Hb_028207_020 Hb_163591_010 Hb_163591_010 Hb_001195_120--Hb_163591_010 Hb_001021_160 Hb_001021_160 Hb_001195_120--Hb_001021_160 Hb_001807_010 Hb_001807_010 Hb_001195_120--Hb_001807_010 Hb_004800_150 Hb_004800_150 Hb_001195_120--Hb_004800_150 Hb_188996_010 Hb_188996_010 Hb_001195_120--Hb_188996_010 Hb_000297_110 Hb_000297_110 Hb_000789_100--Hb_000297_110 Hb_010968_010 Hb_010968_010 Hb_000789_100--Hb_010968_010 Hb_000920_280 Hb_000920_280 Hb_000789_100--Hb_000920_280 Hb_001484_060 Hb_001484_060 Hb_000789_100--Hb_001484_060 Hb_000676_050 Hb_000676_050 Hb_000789_100--Hb_000676_050 Hb_000482_110 Hb_000482_110 Hb_000789_100--Hb_000482_110 Hb_001952_130 Hb_001952_130 Hb_000984_250--Hb_001952_130 Hb_006915_020 Hb_006915_020 Hb_000984_250--Hb_006915_020 Hb_000789_130 Hb_000789_130 Hb_000984_250--Hb_000789_130 Hb_010531_050 Hb_010531_050 Hb_000984_250--Hb_010531_050 Hb_000733_050 Hb_000733_050 Hb_000984_250--Hb_000733_050 Hb_013016_020 Hb_013016_020 Hb_000984_250--Hb_013016_020 Hb_001675_120--Hb_001952_130 Hb_001675_120--Hb_000003_150 Hb_000197_050 Hb_000197_050 Hb_001675_120--Hb_000197_050 Hb_001675_120--Hb_000984_250 Hb_003388_050 Hb_003388_050 Hb_001675_120--Hb_003388_050 Hb_002498_280 Hb_002498_280 Hb_001675_120--Hb_002498_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183054 0.0278898 0.15636 0.0580413 0.0999728 0.0717196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0764943 0 0 0.0488543 0

CAGE analysis