Hb_007594_120

Information

Type transcription factor
Description TF Family: MIKC
Location Contig7594: 85624-100008
Sequence    

Annotation

kegg
ID tcc:TCM_005456
description AGAMOUS-like 20 isoform 2
nr
ID ACZ36915.1
description MADS-box transcription factor 2 [Hevea brasiliensis]
swissprot
ID O64645
description MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1
trembl
ID D1MFS7
description MADS-box transcription factor 2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein soc1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57199: 85667-99884 , PASA_asmbl_57200: 85667-99884 , PASA_asmbl_57201: 85549-99902
cDNA
(Sanger)
(ID:Location)		 041_K14.ab1: 92581-99798

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007594_120 0.0 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
2 Hb_002876_120 0.0609171079 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
3 Hb_000975_300 0.0715359788 - - Rab2 [Hevea brasiliensis]
4 Hb_000069_550 0.0756939244 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
5 Hb_000062_340 0.0807546748 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
6 Hb_020301_040 0.0867926985 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
7 Hb_024714_060 0.0909859647 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
8 Hb_002603_150 0.0926326973 - - PREDICTED: protein yippee-like [Jatropha curcas]
9 Hb_000012_130 0.0935304934 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
10 Hb_002182_030 0.0941199862 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
11 Hb_006573_220 0.0955579127 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
12 Hb_003581_260 0.0959434248 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
13 Hb_001687_040 0.0991967083 - - actin-depolymerizing factor [Hevea brasiliensis]
14 Hb_000069_100 0.099314174 - - conserved hypothetical protein [Ricinus communis]
15 Hb_032803_010 0.1037468466 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
16 Hb_001157_010 0.1053191739 - - deoxyhypusine synthase, putative [Ricinus communis]
17 Hb_007382_150 0.1054992617 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
18 Hb_000802_100 0.1065835113 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
19 Hb_006831_030 0.106982129 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
20 Hb_000302_220 0.107130713 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007594_120 Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_007594_120--Hb_002876_120 Hb_000975_300 Hb_000975_300 Hb_007594_120--Hb_000975_300 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_000062_340 Hb_000062_340 Hb_007594_120--Hb_000062_340 Hb_020301_040 Hb_020301_040 Hb_007594_120--Hb_020301_040 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_002876_120--Hb_003579_030 Hb_002876_120--Hb_020301_040 Hb_001157_010 Hb_001157_010 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050 Hb_000975_300--Hb_000062_340 Hb_000975_300--Hb_020301_040 Hb_000963_180 Hb_000963_180 Hb_000975_300--Hb_000963_180 Hb_002182_030 Hb_002182_030 Hb_000975_300--Hb_002182_030 Hb_000975_300--Hb_002876_120 Hb_006569_100 Hb_006569_100 Hb_000069_550--Hb_006569_100 Hb_002603_150 Hb_002603_150 Hb_000069_550--Hb_002603_150 Hb_000069_550--Hb_002876_120 Hb_017948_010 Hb_017948_010 Hb_000069_550--Hb_017948_010 Hb_001191_090 Hb_001191_090 Hb_000069_550--Hb_001191_090 Hb_003632_010 Hb_003632_010 Hb_000062_340--Hb_003632_010 Hb_010142_070 Hb_010142_070 Hb_000062_340--Hb_010142_070 Hb_000302_220 Hb_000302_220 Hb_000062_340--Hb_000302_220 Hb_000735_130 Hb_000735_130 Hb_000062_340--Hb_000735_130 Hb_020301_040--Hb_003579_030 Hb_004375_140 Hb_004375_140 Hb_020301_040--Hb_004375_140 Hb_021409_030 Hb_021409_030 Hb_020301_040--Hb_021409_030 Hb_001006_180 Hb_001006_180 Hb_024714_060--Hb_001006_180 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_001762_060 Hb_001762_060 Hb_024714_060--Hb_001762_060 Hb_006831_030 Hb_006831_030 Hb_024714_060--Hb_006831_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.5577 5.89508 23.5925 29.3715 31.2988 32.8498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.8984 130.672 134.19 17.234 22.0262

CAGE analysis