Hb_007594_130

Information

Type -
Description -
Location Contig7594: 102635-110426
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15320g
description POPTRDRAFT_851914; calcineurin B subunit-related family protein
nr
ID XP_012083509.1
description PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
swissprot
ID Q8S8S2
description Lysophospholipid acyltransferase LPEAT2 OS=Arabidopsis thaliana GN=LPEAT2 PE=1 SV=1
trembl
ID E6NU22
description JHL05D22.3 protein OS=Jatropha curcas GN=JHL05D22.3 PE=4 SV=1
Gene Ontology
ID GO:0005509
description lysophospholipid acyltransferase lpeat2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57202: 102738-110138 , PASA_asmbl_57203: 102738-110138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007594_130 0.0 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
2 Hb_004881_020 0.0389057155 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
3 Hb_003952_070 0.0572907373 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_002671_100 0.0583834847 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
5 Hb_000212_240 0.0694223612 - - short-chain dehydrogenase, putative [Ricinus communis]
6 Hb_003030_070 0.0710647968 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
7 Hb_040262_010 0.0711569438 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
8 Hb_000538_100 0.0715790924 - - conserved hypothetical protein [Ricinus communis]
9 Hb_144598_030 0.0723271054 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
10 Hb_001369_180 0.0738389708 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
11 Hb_000526_050 0.0752688442 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
12 Hb_006252_040 0.0754080409 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
13 Hb_002495_040 0.0758712669 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
14 Hb_103012_010 0.0764767192 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
15 Hb_001579_320 0.076732746 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
16 Hb_000085_160 0.0783843087 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
17 Hb_000465_430 0.0783926243 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
18 Hb_007218_080 0.0788320922 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
19 Hb_007317_110 0.0822319661 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
20 Hb_001946_010 0.0822466944 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007594_130 Hb_007594_130 Hb_004881_020 Hb_004881_020 Hb_007594_130--Hb_004881_020 Hb_003952_070 Hb_003952_070 Hb_007594_130--Hb_003952_070 Hb_002671_100 Hb_002671_100 Hb_007594_130--Hb_002671_100 Hb_000212_240 Hb_000212_240 Hb_007594_130--Hb_000212_240 Hb_003030_070 Hb_003030_070 Hb_007594_130--Hb_003030_070 Hb_040262_010 Hb_040262_010 Hb_007594_130--Hb_040262_010 Hb_004881_020--Hb_003952_070 Hb_006252_040 Hb_006252_040 Hb_004881_020--Hb_006252_040 Hb_004881_020--Hb_000212_240 Hb_103012_010 Hb_103012_010 Hb_004881_020--Hb_103012_010 Hb_004881_020--Hb_002671_100 Hb_003952_070--Hb_006252_040 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150 Hb_002671_100--Hb_040262_010 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170 Hb_000212_240--Hb_006252_040 Hb_002716_130 Hb_002716_130 Hb_000212_240--Hb_002716_130 Hb_000025_110 Hb_000025_110 Hb_000212_240--Hb_000025_110 Hb_000212_240--Hb_004117_130 Hb_000606_090 Hb_000606_090 Hb_000212_240--Hb_000606_090 Hb_001369_180 Hb_001369_180 Hb_003030_070--Hb_001369_180 Hb_003665_060 Hb_003665_060 Hb_003030_070--Hb_003665_060 Hb_000230_560 Hb_000230_560 Hb_003030_070--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_003030_070--Hb_002495_040 Hb_007317_110 Hb_007317_110 Hb_003030_070--Hb_007317_110 Hb_002391_300 Hb_002391_300 Hb_003030_070--Hb_002391_300 Hb_040262_010--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_040262_010--Hb_001946_010 Hb_040262_010--Hb_007317_110 Hb_040262_010--Hb_000260_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.79935 6.65641 5.23822 8.24288 12.8273 16.1676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7076 9.51528 5.83299 6.69707 4.82098

CAGE analysis