Hb_007595_050

Information

Type -
Description -
Location Contig7595: 48469-64820
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00127
description ycf2; Ycf2
nr
ID YP_004327722.1
description hypothetical chloroplast RF2 [Hevea brasiliensis]
swissprot
ID A4GYV4
description Protein Ycf2 OS=Populus trichocarpa GN=ycf2-1 PE=3 SV=1
trembl
ID F2X0F9
description Protein Ycf2 OS=Hevea brasiliensis GN=ycf2 PE=3 SV=1
Gene Ontology
ID GO:0009507
description ycf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57206: 38903-47788 , PASA_asmbl_57207: 38903-47788 , PASA_asmbl_57208: 38861-47788 , PASA_asmbl_57209: 38861-47788 , PASA_asmbl_57210: 54395-54697 , PASA_asmbl_57211: 54840-55065 , PASA_asmbl_57212: 63251-64214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007595_050 0.0 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
2 Hb_003861_150 0.1024677602 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
3 Hb_002835_090 0.1113386697 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
4 Hb_007595_020 0.1134409956 - - maturase K [Hevea brasiliensis]
5 Hb_005228_060 0.1144181324 - - PREDICTED: uncharacterized protein LOC102604101 [Solanum tuberosum]
6 Hb_011900_020 0.1203553144 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
7 Hb_156850_020 0.121492501 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
8 Hb_006816_040 0.1283708674 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
9 Hb_106552_030 0.1311719387 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
10 Hb_003963_040 0.1320606975 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
11 Hb_185274_010 0.1334691091 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
12 Hb_000359_070 0.1342824345 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
13 Hb_000367_220 0.1351759604 - - hypothetical protein RCOM_1470580 [Ricinus communis]
14 Hb_001584_210 0.1362127133 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
15 Hb_000029_380 0.1364135211 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000035_340 0.139276301 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003944_010 0.1414395078 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
18 Hb_010080_070 0.1425766309 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
19 Hb_000992_090 0.1435510232 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
20 Hb_185274_020 0.1453591999 - - Ycf2 (chloroplast) [Andrographis paniculata]

Gene co-expression network

sample Hb_007595_050 Hb_007595_050 Hb_003861_150 Hb_003861_150 Hb_007595_050--Hb_003861_150 Hb_002835_090 Hb_002835_090 Hb_007595_050--Hb_002835_090 Hb_007595_020 Hb_007595_020 Hb_007595_050--Hb_007595_020 Hb_005228_060 Hb_005228_060 Hb_007595_050--Hb_005228_060 Hb_011900_020 Hb_011900_020 Hb_007595_050--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_007595_050--Hb_156850_020 Hb_005399_040 Hb_005399_040 Hb_003861_150--Hb_005399_040 Hb_001584_210 Hb_001584_210 Hb_003861_150--Hb_001584_210 Hb_000161_010 Hb_000161_010 Hb_003861_150--Hb_000161_010 Hb_003861_150--Hb_005228_060 Hb_003861_150--Hb_002835_090 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_068804_110 Hb_068804_110 Hb_007595_020--Hb_068804_110 Hb_000367_220 Hb_000367_220 Hb_007595_020--Hb_000367_220 Hb_002044_070 Hb_002044_070 Hb_007595_020--Hb_002044_070 Hb_007595_020--Hb_005228_060 Hb_000009_470 Hb_000009_470 Hb_007595_020--Hb_000009_470 Hb_029622_060 Hb_029622_060 Hb_007595_020--Hb_029622_060 Hb_005228_060--Hb_000367_220 Hb_028960_010 Hb_028960_010 Hb_005228_060--Hb_028960_010 Hb_005228_060--Hb_068804_110 Hb_000186_160 Hb_000186_160 Hb_005228_060--Hb_000186_160 Hb_011900_020--Hb_156850_020 Hb_011900_020--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_011900_020--Hb_000360_010 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_010080_070 Hb_010080_070 Hb_011900_020--Hb_010080_070 Hb_106552_030 Hb_106552_030 Hb_156850_020--Hb_106552_030 Hb_156850_020--Hb_010080_070 Hb_156850_020--Hb_028960_010 Hb_012940_020 Hb_012940_020 Hb_156850_020--Hb_012940_020 Hb_156850_020--Hb_000359_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0432423 0.0583686 0.479436 0.233461 0.0370151 0.0875465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0146105 0 0.0439819 0.0273619 1.96221

CAGE analysis