Hb_007597_010

Information

Type -
Description -
Location Contig7597: 2531-10981
Sequence    

Annotation

kegg
ID pop:POPTR_0006s16320g
description hypothetical protein
nr
ID KJB64921.1
description hypothetical protein B456_010G072300 [Gossypium raimondii]
swissprot
ID F4IUE7
description Protein CONTINUOUS VASCULAR RING 1 OS=Arabidopsis thaliana GN=COV1 PE=1 SV=2
trembl
ID A0A0D2UAG1
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G072300 PE=4 SV=1
Gene Ontology
ID GO:0003746
description protein continuous vascular ring 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57213: 3618-3804 , PASA_asmbl_57214: 1183-4953 , PASA_asmbl_57216: 5776-12226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007597_010 0.0 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
2 Hb_003929_070 0.0696250411 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
3 Hb_000336_020 0.0723033508 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
4 Hb_001677_200 0.0730764901 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007248_030 0.0765646182 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
6 Hb_044486_020 0.0817390395 - - CASTOR protein [Glycine max]
7 Hb_002326_040 0.0864780289 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
8 Hb_012518_070 0.088118202 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
9 Hb_001405_210 0.0881372311 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
10 Hb_001856_180 0.089802391 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
11 Hb_000635_040 0.0899030498 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_001329_250 0.0908515866 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
13 Hb_010407_060 0.0909908345 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
14 Hb_001699_010 0.0912172125 - - drought-inducible protein [Manihot esculenta]
15 Hb_000773_040 0.0914375957 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
16 Hb_000702_090 0.0929243232 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
17 Hb_011249_070 0.0930691676 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
18 Hb_005946_210 0.0930794795 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
19 Hb_000046_570 0.0933111007 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
20 Hb_000103_340 0.093694567 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_007597_010 Hb_007597_010 Hb_003929_070 Hb_003929_070 Hb_007597_010--Hb_003929_070 Hb_000336_020 Hb_000336_020 Hb_007597_010--Hb_000336_020 Hb_001677_200 Hb_001677_200 Hb_007597_010--Hb_001677_200 Hb_007248_030 Hb_007248_030 Hb_007597_010--Hb_007248_030 Hb_044486_020 Hb_044486_020 Hb_007597_010--Hb_044486_020 Hb_002326_040 Hb_002326_040 Hb_007597_010--Hb_002326_040 Hb_001259_050 Hb_001259_050 Hb_003929_070--Hb_001259_050 Hb_012395_170 Hb_012395_170 Hb_003929_070--Hb_012395_170 Hb_002413_010 Hb_002413_010 Hb_003929_070--Hb_002413_010 Hb_000258_070 Hb_000258_070 Hb_003929_070--Hb_000258_070 Hb_000300_270 Hb_000300_270 Hb_003929_070--Hb_000300_270 Hb_000996_020 Hb_000996_020 Hb_000336_020--Hb_000996_020 Hb_008397_010 Hb_008397_010 Hb_000336_020--Hb_008397_010 Hb_000529_060 Hb_000529_060 Hb_000336_020--Hb_000529_060 Hb_001856_180 Hb_001856_180 Hb_000336_020--Hb_001856_180 Hb_012055_110 Hb_012055_110 Hb_000336_020--Hb_012055_110 Hb_002849_170 Hb_002849_170 Hb_000336_020--Hb_002849_170 Hb_023313_040 Hb_023313_040 Hb_001677_200--Hb_023313_040 Hb_001405_210 Hb_001405_210 Hb_001677_200--Hb_001405_210 Hb_001677_200--Hb_044486_020 Hb_000160_070 Hb_000160_070 Hb_001677_200--Hb_000160_070 Hb_000702_090 Hb_000702_090 Hb_001677_200--Hb_000702_090 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_007248_030--Hb_001405_210 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_007248_030--Hb_001856_180 Hb_000359_190 Hb_000359_190 Hb_044486_020--Hb_000359_190 Hb_000020_160 Hb_000020_160 Hb_044486_020--Hb_000020_160 Hb_000890_030 Hb_000890_030 Hb_044486_020--Hb_000890_030 Hb_010315_020 Hb_010315_020 Hb_044486_020--Hb_010315_020 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020 Hb_000214_050 Hb_000214_050 Hb_002326_040--Hb_000214_050 Hb_012506_030 Hb_012506_030 Hb_002326_040--Hb_012506_030 Hb_002811_270 Hb_002811_270 Hb_002326_040--Hb_002811_270 Hb_001518_080 Hb_001518_080 Hb_002326_040--Hb_001518_080 Hb_002326_040--Hb_007248_030 Hb_002326_040--Hb_023313_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42584 19.1022 18.9113 24.5256 15.197 13.6461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.16122 12.1338 9.50179 10.7441 17.8886

CAGE analysis