Hb_007597_030

Information

Type -
Description -
Location Contig7597: 16119-19892
Sequence    

Annotation

kegg
ID rcu:RCOM_1052550
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002514292.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8S9D1
description Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
trembl
ID B9RKP8
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1052550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57221: 16039-16191 , PASA_asmbl_57222: 16213-19763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007597_030 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_002272_210 0.0612843409 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
3 Hb_005000_110 0.0718106496 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
4 Hb_001343_030 0.0743030357 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
5 Hb_000460_040 0.0763808311 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
6 Hb_003623_080 0.0780548017 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
7 Hb_005211_080 0.0782322515 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
8 Hb_000962_090 0.0816870591 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
9 Hb_000049_100 0.084802739 - - Photosystem II reaction center W protein, putative [Ricinus communis]
10 Hb_004306_090 0.0865999719 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
11 Hb_000254_130 0.0871176616 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
12 Hb_003371_080 0.087208578 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
13 Hb_012395_090 0.0889897835 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
14 Hb_005329_010 0.0894016699 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
15 Hb_002375_030 0.0894194078 - - F-box family protein [Populus trichocarpa]
16 Hb_002007_220 0.0914591565 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
17 Hb_001159_050 0.0920108399 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
18 Hb_000808_130 0.0926659692 - - 3-5 exonuclease, putative [Ricinus communis]
19 Hb_003494_090 0.0938342507 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
20 Hb_008195_070 0.0942951167 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007597_030 Hb_007597_030 Hb_002272_210 Hb_002272_210 Hb_007597_030--Hb_002272_210 Hb_005000_110 Hb_005000_110 Hb_007597_030--Hb_005000_110 Hb_001343_030 Hb_001343_030 Hb_007597_030--Hb_001343_030 Hb_000460_040 Hb_000460_040 Hb_007597_030--Hb_000460_040 Hb_003623_080 Hb_003623_080 Hb_007597_030--Hb_003623_080 Hb_005211_080 Hb_005211_080 Hb_007597_030--Hb_005211_080 Hb_002272_210--Hb_003623_080 Hb_002272_210--Hb_001343_030 Hb_001006_040 Hb_001006_040 Hb_002272_210--Hb_001006_040 Hb_146225_020 Hb_146225_020 Hb_002272_210--Hb_146225_020 Hb_001975_120 Hb_001975_120 Hb_002272_210--Hb_001975_120 Hb_005000_110--Hb_001343_030 Hb_000808_130 Hb_000808_130 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_023344_090 Hb_023344_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250 Hb_001343_030--Hb_000962_090 Hb_001343_030--Hb_001975_120 Hb_000530_040 Hb_000530_040 Hb_001343_030--Hb_000530_040 Hb_001343_030--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_001343_030--Hb_000359_050 Hb_000088_230 Hb_000088_230 Hb_000460_040--Hb_000088_230 Hb_005329_010 Hb_005329_010 Hb_000460_040--Hb_005329_010 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_000460_040--Hb_005211_080 Hb_008225_050 Hb_008225_050 Hb_003623_080--Hb_008225_050 Hb_003623_080--Hb_001006_040 Hb_000254_130 Hb_000254_130 Hb_003623_080--Hb_000254_130 Hb_001488_230 Hb_001488_230 Hb_003623_080--Hb_001488_230 Hb_003623_080--Hb_146225_020 Hb_005211_080--Hb_000962_090 Hb_005211_080--Hb_000359_050 Hb_001006_150 Hb_001006_150 Hb_005211_080--Hb_001006_150 Hb_005211_080--Hb_005329_010 Hb_004306_090 Hb_004306_090 Hb_005211_080--Hb_004306_090 Hb_001766_160 Hb_001766_160 Hb_005211_080--Hb_001766_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118455 2.55199 22.696 10.1222 0.00864606 0.0390421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470637 0.246885 0.0293543 0.416973 28.5351

CAGE analysis