Hb_007603_010

Information

Type -
Description -
Location Contig7603: 2802-4745
Sequence    

Annotation

kegg
ID rcu:RCOM_1382930
description hypothetical protein
nr
ID XP_002522105.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7Y9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382930 PE=4 SV=1
Gene Ontology
ID GO:0016740
description atp phosphoribosyltransferase regulatory subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007603_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007904_080 0.1781049958 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
3 Hb_000041_020 0.1863124486 - - hypothetical protein POPTR_0009s11640g [Populus trichocarpa]
4 Hb_109168_010 0.1875761775 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
5 Hb_000850_050 0.1883089231 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
6 Hb_001484_120 0.1887125594 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
7 Hb_000099_210 0.1896488129 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
8 Hb_000627_080 0.1904917987 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_051407_010 0.1919539968 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
10 Hb_081879_030 0.1923569513 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
11 Hb_000743_050 0.1926116352 - - unnamed protein product [Vitis vinifera]
12 Hb_001322_210 0.1928715373 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
13 Hb_002105_080 0.1937761616 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_008247_010 0.1943368704 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000497_140 0.1952195472 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
16 Hb_000193_140 0.1970466548 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007849_020 0.199784963 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
18 Hb_000009_210 0.202119874 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
19 Hb_000342_090 0.2023517304 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
20 Hb_006816_300 0.202867221 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]

Gene co-expression network

sample Hb_007603_010 Hb_007603_010 Hb_007904_080 Hb_007904_080 Hb_007603_010--Hb_007904_080 Hb_000041_020 Hb_000041_020 Hb_007603_010--Hb_000041_020 Hb_109168_010 Hb_109168_010 Hb_007603_010--Hb_109168_010 Hb_000850_050 Hb_000850_050 Hb_007603_010--Hb_000850_050 Hb_001484_120 Hb_001484_120 Hb_007603_010--Hb_001484_120 Hb_000099_210 Hb_000099_210 Hb_007603_010--Hb_000099_210 Hb_141547_010 Hb_141547_010 Hb_007904_080--Hb_141547_010 Hb_000342_090 Hb_000342_090 Hb_007904_080--Hb_000342_090 Hb_111985_080 Hb_111985_080 Hb_007904_080--Hb_111985_080 Hb_002105_080 Hb_002105_080 Hb_007904_080--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_007904_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_007904_080--Hb_007849_020 Hb_001437_180 Hb_001437_180 Hb_000041_020--Hb_001437_180 Hb_002636_050 Hb_002636_050 Hb_000041_020--Hb_002636_050 Hb_000041_020--Hb_001484_120 Hb_001771_130 Hb_001771_130 Hb_000041_020--Hb_001771_130 Hb_000009_210 Hb_000009_210 Hb_000041_020--Hb_000009_210 Hb_027450_010 Hb_027450_010 Hb_000041_020--Hb_027450_010 Hb_007441_070 Hb_007441_070 Hb_109168_010--Hb_007441_070 Hb_002587_020 Hb_002587_020 Hb_109168_010--Hb_002587_020 Hb_011316_110 Hb_011316_110 Hb_109168_010--Hb_011316_110 Hb_001504_160 Hb_001504_160 Hb_109168_010--Hb_001504_160 Hb_041091_010 Hb_041091_010 Hb_109168_010--Hb_041091_010 Hb_000048_140 Hb_000048_140 Hb_109168_010--Hb_000048_140 Hb_007810_100 Hb_007810_100 Hb_000850_050--Hb_007810_100 Hb_004218_240 Hb_004218_240 Hb_000850_050--Hb_004218_240 Hb_001718_050 Hb_001718_050 Hb_000850_050--Hb_001718_050 Hb_117552_010 Hb_117552_010 Hb_000850_050--Hb_117552_010 Hb_004306_080 Hb_004306_080 Hb_000850_050--Hb_004306_080 Hb_003656_180 Hb_003656_180 Hb_000850_050--Hb_003656_180 Hb_067345_010 Hb_067345_010 Hb_001484_120--Hb_067345_010 Hb_002805_070 Hb_002805_070 Hb_001484_120--Hb_002805_070 Hb_001484_120--Hb_000048_140 Hb_002196_020 Hb_002196_020 Hb_001484_120--Hb_002196_020 Hb_005883_050 Hb_005883_050 Hb_001484_120--Hb_005883_050 Hb_152079_010 Hb_152079_010 Hb_001484_120--Hb_152079_010 Hb_008406_140 Hb_008406_140 Hb_000099_210--Hb_008406_140 Hb_005976_050 Hb_005976_050 Hb_000099_210--Hb_005976_050 Hb_000031_150 Hb_000031_150 Hb_000099_210--Hb_000031_150 Hb_002102_030 Hb_002102_030 Hb_000099_210--Hb_002102_030 Hb_000099_210--Hb_007810_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51894 0.474773 0.231584 0.451787 1.42568 2.16453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.277178 1.11303 0.877318 0.527091

CAGE analysis