Hb_007603_020

Information

Type -
Description -
Location Contig7603: 12637-15467
Sequence    

Annotation

kegg
ID pxb:103945507
description LRR receptor-like serine/threonine-protein kinase GSO1
nr
ID XP_012074609.1
description PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067KIJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09914 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007603_020 0.0 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
2 Hb_002035_090 0.1864680492 - - -
3 Hb_001767_040 0.1900814003 - - dehydroascorbate reductase, putative [Ricinus communis]
4 Hb_000181_410 0.2131182516 - - conserved hypothetical protein [Ricinus communis]
5 Hb_100964_010 0.2209281759 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001622_010 0.2221482845 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000165_140 0.2262541043 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
8 Hb_001807_030 0.2356129568 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
9 Hb_000045_320 0.2375364787 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
10 Hb_004994_130 0.2377707208 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
11 Hb_001916_060 0.2378802162 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
12 Hb_004055_110 0.2399530601 - - PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
13 Hb_010315_070 0.2404971614 - - -
14 Hb_005843_160 0.2422171077 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
15 Hb_000684_130 0.2425978842 - - -
16 Hb_000173_150 0.2432514651 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
17 Hb_002929_130 0.2441955238 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_100525_010 0.2461229879 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
19 Hb_001565_020 0.2500741456 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
20 Hb_000201_040 0.250092886 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]

Gene co-expression network

sample Hb_007603_020 Hb_007603_020 Hb_002035_090 Hb_002035_090 Hb_007603_020--Hb_002035_090 Hb_001767_040 Hb_001767_040 Hb_007603_020--Hb_001767_040 Hb_000181_410 Hb_000181_410 Hb_007603_020--Hb_000181_410 Hb_100964_010 Hb_100964_010 Hb_007603_020--Hb_100964_010 Hb_001622_010 Hb_001622_010 Hb_007603_020--Hb_001622_010 Hb_000165_140 Hb_000165_140 Hb_007603_020--Hb_000165_140 Hb_006615_100 Hb_006615_100 Hb_002035_090--Hb_006615_100 Hb_002035_080 Hb_002035_080 Hb_002035_090--Hb_002035_080 Hb_026206_020 Hb_026206_020 Hb_002035_090--Hb_026206_020 Hb_007680_020 Hb_007680_020 Hb_002035_090--Hb_007680_020 Hb_000997_410 Hb_000997_410 Hb_002035_090--Hb_000997_410 Hb_000997_150 Hb_000997_150 Hb_001767_040--Hb_000997_150 Hb_000189_430 Hb_000189_430 Hb_001767_040--Hb_000189_430 Hb_001269_310 Hb_001269_310 Hb_001767_040--Hb_001269_310 Hb_001195_190 Hb_001195_190 Hb_001767_040--Hb_001195_190 Hb_097646_010 Hb_097646_010 Hb_001767_040--Hb_097646_010 Hb_000107_470 Hb_000107_470 Hb_000181_410--Hb_000107_470 Hb_004994_130 Hb_004994_130 Hb_000181_410--Hb_004994_130 Hb_000904_130 Hb_000904_130 Hb_000181_410--Hb_000904_130 Hb_000152_510 Hb_000152_510 Hb_000181_410--Hb_000152_510 Hb_163839_010 Hb_163839_010 Hb_000181_410--Hb_163839_010 Hb_002929_130 Hb_002929_130 Hb_100964_010--Hb_002929_130 Hb_100964_010--Hb_002035_090 Hb_114984_010 Hb_114984_010 Hb_100964_010--Hb_114984_010 Hb_138600_010 Hb_138600_010 Hb_100964_010--Hb_138600_010 Hb_050686_010 Hb_050686_010 Hb_100964_010--Hb_050686_010 Hb_005464_030 Hb_005464_030 Hb_001622_010--Hb_005464_030 Hb_002196_010 Hb_002196_010 Hb_001622_010--Hb_002196_010 Hb_010531_050 Hb_010531_050 Hb_001622_010--Hb_010531_050 Hb_001865_040 Hb_001865_040 Hb_001622_010--Hb_001865_040 Hb_178127_010 Hb_178127_010 Hb_001622_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_001622_010--Hb_128695_030 Hb_000173_150 Hb_000173_150 Hb_000165_140--Hb_000173_150 Hb_006915_020 Hb_006915_020 Hb_000165_140--Hb_006915_020 Hb_027380_030 Hb_027380_030 Hb_000165_140--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_000165_140--Hb_016734_090 Hb_000599_170 Hb_000599_170 Hb_000165_140--Hb_000599_170 Hb_002092_100 Hb_002092_100 Hb_000165_140--Hb_002092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11756 0.840241 0.828418 0.555773 0.861382 0.532553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.502101 0.0740507 0.0658504

CAGE analysis