Hb_007617_020

Information

Type -
Description -
Location Contig7617: 14880-16244
Sequence    

Annotation

kegg
ID rcu:RCOM_1447400
description hypothetical protein
nr
ID XP_002512913.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID B9RH54
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447400 PE=4 SV=1
Gene Ontology
ID GO:0005886
description adenine nucleotide alpha hydrolases-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57288: 15165-17592
cDNA
(Sanger)
(ID:Location)		 021_L22.ab1: 15165-16070

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007617_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011805_080 0.0735856738 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
3 Hb_000487_250 0.088176521 - - 60S ribosomal protein L27e, putative [Ricinus communis]
4 Hb_001946_210 0.0950389632 - - ribosomal protein l7ae, putative [Ricinus communis]
5 Hb_002311_350 0.100421713 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
6 Hb_002811_230 0.1064180632 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
7 Hb_169246_010 0.1103525831 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003001_060 0.1112555148 - - wound-responsive family protein [Populus trichocarpa]
9 Hb_005618_140 0.11142769 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
10 Hb_046049_010 0.1118787374 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
11 Hb_002374_490 0.1127176341 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007747_090 0.1131128739 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
13 Hb_004005_010 0.1154957731 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
14 Hb_000189_270 0.1174013064 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
15 Hb_001178_100 0.1200606169 - - 60S acidic ribosomal protein P2-4 [Theobroma cacao]
16 Hb_000258_350 0.1205520844 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
17 Hb_001818_020 0.1218890497 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
18 Hb_000917_110 0.1240054545 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
19 Hb_000380_190 0.1243434865 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
20 Hb_003376_320 0.1243634736 - - 60S ribosomal protein L12A [Hevea brasiliensis]

Gene co-expression network

sample Hb_007617_020 Hb_007617_020 Hb_011805_080 Hb_011805_080 Hb_007617_020--Hb_011805_080 Hb_000487_250 Hb_000487_250 Hb_007617_020--Hb_000487_250 Hb_001946_210 Hb_001946_210 Hb_007617_020--Hb_001946_210 Hb_002311_350 Hb_002311_350 Hb_007617_020--Hb_002311_350 Hb_002811_230 Hb_002811_230 Hb_007617_020--Hb_002811_230 Hb_169246_010 Hb_169246_010 Hb_007617_020--Hb_169246_010 Hb_003001_060 Hb_003001_060 Hb_011805_080--Hb_003001_060 Hb_001369_650 Hb_001369_650 Hb_011805_080--Hb_001369_650 Hb_002893_060 Hb_002893_060 Hb_011805_080--Hb_002893_060 Hb_007747_090 Hb_007747_090 Hb_011805_080--Hb_007747_090 Hb_003878_190 Hb_003878_190 Hb_011805_080--Hb_003878_190 Hb_005618_140 Hb_005618_140 Hb_000487_250--Hb_005618_140 Hb_001818_020 Hb_001818_020 Hb_000487_250--Hb_001818_020 Hb_000012_220 Hb_000012_220 Hb_000487_250--Hb_000012_220 Hb_000970_010 Hb_000970_010 Hb_000487_250--Hb_000970_010 Hb_000025_530 Hb_000025_530 Hb_000487_250--Hb_000025_530 Hb_003939_080 Hb_003939_080 Hb_001946_210--Hb_003939_080 Hb_002868_010 Hb_002868_010 Hb_001946_210--Hb_002868_010 Hb_000101_270 Hb_000101_270 Hb_001946_210--Hb_000101_270 Hb_046049_010 Hb_046049_010 Hb_001946_210--Hb_046049_010 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_001946_210--Hb_002311_350 Hb_002311_350--Hb_000380_190 Hb_001477_110 Hb_001477_110 Hb_002311_350--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_002311_350--Hb_005618_140 Hb_001824_070 Hb_001824_070 Hb_002311_350--Hb_001824_070 Hb_001159_140 Hb_001159_140 Hb_002811_230--Hb_001159_140 Hb_002811_230--Hb_001946_210 Hb_002811_230--Hb_000189_270 Hb_003641_020 Hb_003641_020 Hb_002811_230--Hb_003641_020 Hb_003992_240 Hb_003992_240 Hb_002811_230--Hb_003992_240 Hb_002374_490 Hb_002374_490 Hb_169246_010--Hb_002374_490 Hb_001623_330 Hb_001623_330 Hb_169246_010--Hb_001623_330 Hb_000866_300 Hb_000866_300 Hb_169246_010--Hb_000866_300 Hb_169246_010--Hb_011805_080 Hb_005031_070 Hb_005031_070 Hb_169246_010--Hb_005031_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
160.87 74.7 32.5215 48.0441 135.191 153.216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.697 346.783 74.2079 89.5944 13.026

CAGE analysis