Hb_007617_040

Information

Type -
Description -
Location Contig7617: 35324-36217
Sequence    

Annotation

kegg
ID rcu:RCOM_1447430
description syntaxin, putative
nr
ID XP_012067261.1
description PREDICTED: syntaxin-112-like [Jatropha curcas]
swissprot
ID Q9ZPV9
description Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2
trembl
ID B9RH57
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1447430 PE=3 SV=1
Gene Ontology
ID GO:0005634
description syntaxin-112-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57291: 35448-35644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007617_040 0.0 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
2 Hb_012016_050 0.1687161086 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
3 Hb_000556_130 0.174012557 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
4 Hb_128392_010 0.1755415832 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
5 Hb_021576_050 0.1769091198 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
6 Hb_003813_110 0.1850027717 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001247_060 0.191798514 - - zinc finger protein, putative [Ricinus communis]
8 Hb_004619_090 0.1927886352 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001366_280 0.1928261189 - - PREDICTED: uncharacterized protein LOC105642732 [Jatropha curcas]
10 Hb_000700_020 0.193622085 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
11 Hb_007304_020 0.1946881586 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
12 Hb_000035_230 0.1950469313 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
13 Hb_004884_170 0.1975686942 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
14 Hb_000069_650 0.197863425 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000527_020 0.2003626612 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
16 Hb_001377_370 0.2009659077 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
17 Hb_001329_010 0.203116417 - - zinc finger protein, putative [Ricinus communis]
18 Hb_001205_290 0.2032820314 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
19 Hb_072201_010 0.2055133439 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
20 Hb_001565_090 0.2056039283 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007617_040 Hb_007617_040 Hb_012016_050 Hb_012016_050 Hb_007617_040--Hb_012016_050 Hb_000556_130 Hb_000556_130 Hb_007617_040--Hb_000556_130 Hb_128392_010 Hb_128392_010 Hb_007617_040--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_007617_040--Hb_021576_050 Hb_003813_110 Hb_003813_110 Hb_007617_040--Hb_003813_110 Hb_001247_060 Hb_001247_060 Hb_007617_040--Hb_001247_060 Hb_012016_050--Hb_128392_010 Hb_005701_100 Hb_005701_100 Hb_012016_050--Hb_005701_100 Hb_000039_080 Hb_000039_080 Hb_012016_050--Hb_000039_080 Hb_000700_020 Hb_000700_020 Hb_012016_050--Hb_000700_020 Hb_001205_290 Hb_001205_290 Hb_012016_050--Hb_001205_290 Hb_012016_050--Hb_001247_060 Hb_001329_010 Hb_001329_010 Hb_000556_130--Hb_001329_010 Hb_004619_090 Hb_004619_090 Hb_000556_130--Hb_004619_090 Hb_000556_130--Hb_003813_110 Hb_000663_070 Hb_000663_070 Hb_000556_130--Hb_000663_070 Hb_000656_320 Hb_000656_320 Hb_000556_130--Hb_000656_320 Hb_128392_010--Hb_021576_050 Hb_000527_020 Hb_000527_020 Hb_128392_010--Hb_000527_020 Hb_000035_230 Hb_000035_230 Hb_128392_010--Hb_000035_230 Hb_003847_060 Hb_003847_060 Hb_128392_010--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_128392_010--Hb_005398_050 Hb_003464_010 Hb_003464_010 Hb_128392_010--Hb_003464_010 Hb_021576_050--Hb_000527_020 Hb_021576_050--Hb_003847_060 Hb_021576_050--Hb_000035_230 Hb_021576_050--Hb_005398_050 Hb_118282_020 Hb_118282_020 Hb_021576_050--Hb_118282_020 Hb_000567_290 Hb_000567_290 Hb_003813_110--Hb_000567_290 Hb_000661_150 Hb_000661_150 Hb_003813_110--Hb_000661_150 Hb_003813_110--Hb_004619_090 Hb_000441_210 Hb_000441_210 Hb_003813_110--Hb_000441_210 Hb_002311_090 Hb_002311_090 Hb_003813_110--Hb_002311_090 Hb_000418_040 Hb_000418_040 Hb_003813_110--Hb_000418_040 Hb_000089_090 Hb_000089_090 Hb_001247_060--Hb_000089_090 Hb_012092_040 Hb_012092_040 Hb_001247_060--Hb_012092_040 Hb_001247_060--Hb_000035_230 Hb_059502_010 Hb_059502_010 Hb_001247_060--Hb_059502_010 Hb_007304_020 Hb_007304_020 Hb_001247_060--Hb_007304_020 Hb_000531_010 Hb_000531_010 Hb_001247_060--Hb_000531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165508 0.0212587 2.04888 2.06905 0.0255315 0.0292869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0918268 0 0.0925938 0

CAGE analysis