Hb_007621_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig7621: 18509-30090
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01300g
description POPTRDRAFT_569471; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_012086130.1
description PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57306: 26732-27081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007621_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
2 Hb_001437_280 0.1544315091 - - AMP dependent CoA ligase, putative [Ricinus communis]
3 Hb_001863_180 0.170426084 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]
4 Hb_033312_080 0.1787864465 - - aldose-1-epimerase, putative [Ricinus communis]
5 Hb_000042_090 0.1950186663 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
6 Hb_003659_010 0.1993208662 - - aldo/keto reductase AKR [Manihot esculenta]
7 Hb_005455_010 0.199803445 - - PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X1 [Jatropha curcas]
8 Hb_005917_020 0.2002080785 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
9 Hb_000307_070 0.2011688209 - - protein kinase, putative [Ricinus communis]
10 Hb_005545_020 0.2042122201 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
11 Hb_000941_060 0.2065371214 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
12 Hb_003680_090 0.2070982698 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
13 Hb_000310_060 0.2074273696 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
14 Hb_002486_060 0.2085980005 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
15 Hb_004162_270 0.2088511176 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000270_280 0.2098328648 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_178968_080 0.2111229506 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
18 Hb_000009_420 0.2138817827 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
19 Hb_000753_110 0.2147038253 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
20 Hb_000130_200 0.2147960876 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007621_010 Hb_007621_010 Hb_001437_280 Hb_001437_280 Hb_007621_010--Hb_001437_280 Hb_001863_180 Hb_001863_180 Hb_007621_010--Hb_001863_180 Hb_033312_080 Hb_033312_080 Hb_007621_010--Hb_033312_080 Hb_000042_090 Hb_000042_090 Hb_007621_010--Hb_000042_090 Hb_003659_010 Hb_003659_010 Hb_007621_010--Hb_003659_010 Hb_005455_010 Hb_005455_010 Hb_007621_010--Hb_005455_010 Hb_000820_140 Hb_000820_140 Hb_001437_280--Hb_000820_140 Hb_000718_040 Hb_000718_040 Hb_001437_280--Hb_000718_040 Hb_020437_020 Hb_020437_020 Hb_001437_280--Hb_020437_020 Hb_003055_110 Hb_003055_110 Hb_001437_280--Hb_003055_110 Hb_002486_060 Hb_002486_060 Hb_001437_280--Hb_002486_060 Hb_003053_070 Hb_003053_070 Hb_001863_180--Hb_003053_070 Hb_003680_090 Hb_003680_090 Hb_001863_180--Hb_003680_090 Hb_000310_060 Hb_000310_060 Hb_001863_180--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_001863_180--Hb_000270_280 Hb_005527_060 Hb_005527_060 Hb_001863_180--Hb_005527_060 Hb_001360_030 Hb_001360_030 Hb_001863_180--Hb_001360_030 Hb_002284_220 Hb_002284_220 Hb_033312_080--Hb_002284_220 Hb_005545_020 Hb_005545_020 Hb_033312_080--Hb_005545_020 Hb_002486_020 Hb_002486_020 Hb_033312_080--Hb_002486_020 Hb_003299_020 Hb_003299_020 Hb_033312_080--Hb_003299_020 Hb_000406_030 Hb_000406_030 Hb_033312_080--Hb_000406_030 Hb_000640_330 Hb_000640_330 Hb_000042_090--Hb_000640_330 Hb_003915_020 Hb_003915_020 Hb_000042_090--Hb_003915_020 Hb_003119_130 Hb_003119_130 Hb_000042_090--Hb_003119_130 Hb_000164_110 Hb_000164_110 Hb_000042_090--Hb_000164_110 Hb_000147_020 Hb_000147_020 Hb_000042_090--Hb_000147_020 Hb_000694_050 Hb_000694_050 Hb_000042_090--Hb_000694_050 Hb_001195_220 Hb_001195_220 Hb_003659_010--Hb_001195_220 Hb_007576_140 Hb_007576_140 Hb_003659_010--Hb_007576_140 Hb_002701_160 Hb_002701_160 Hb_003659_010--Hb_002701_160 Hb_001240_050 Hb_001240_050 Hb_003659_010--Hb_001240_050 Hb_000679_110 Hb_000679_110 Hb_003659_010--Hb_000679_110 Hb_002235_050 Hb_002235_050 Hb_003659_010--Hb_002235_050 Hb_002811_240 Hb_002811_240 Hb_005455_010--Hb_002811_240 Hb_138229_010 Hb_138229_010 Hb_005455_010--Hb_138229_010 Hb_000699_050 Hb_000699_050 Hb_005455_010--Hb_000699_050 Hb_001226_100 Hb_001226_100 Hb_005455_010--Hb_001226_100 Hb_007007_130 Hb_007007_130 Hb_005455_010--Hb_007007_130 Hb_000152_770 Hb_000152_770 Hb_005455_010--Hb_000152_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0684703 0.318657 0.066274 0 0.00885051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224496 0.0618345 0.0508747 0.192458 0.245972

CAGE analysis