Hb_007622_010

Information

Type -
Description -
Location Contig7622: 39058-42050
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID AAC26250.1
description contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O81506
description Putative retrotransposon protein OS=Arabidopsis thaliana GN=T7M24.7 PE=4 SV=1
Gene Ontology
ID GO:0003824
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007622_010 0.0 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
2 Hb_042083_020 0.0008733667 - - -
3 Hb_002110_220 0.0037841447 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002387_030 0.0109167076 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007810_080 0.0274518894 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
6 Hb_003940_060 0.0279912303 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
7 Hb_029695_040 0.0309552754 - - Pectate lyase precursor, putative [Ricinus communis]
8 Hb_001234_090 0.031877971 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
9 Hb_174662_020 0.0324410874 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
10 Hb_000501_080 0.0327721907 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
11 Hb_186634_010 0.0387723569 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
12 Hb_021888_160 0.040512989 - - -
13 Hb_118909_010 0.0411077399 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
14 Hb_000575_050 0.0428646135 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
15 Hb_006907_110 0.0437639949 - - -
16 Hb_108160_010 0.0502395441 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_121689_030 0.0511400977 - - hypothetical protein, partial [Staphylococcus aureus]
18 Hb_000574_490 0.0515880049 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
19 Hb_000173_090 0.0517986997 - - -
20 Hb_008145_020 0.0523072018 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_007622_010 Hb_007622_010 Hb_042083_020 Hb_042083_020 Hb_007622_010--Hb_042083_020 Hb_002110_220 Hb_002110_220 Hb_007622_010--Hb_002110_220 Hb_002387_030 Hb_002387_030 Hb_007622_010--Hb_002387_030 Hb_007810_080 Hb_007810_080 Hb_007622_010--Hb_007810_080 Hb_003940_060 Hb_003940_060 Hb_007622_010--Hb_003940_060 Hb_029695_040 Hb_029695_040 Hb_007622_010--Hb_029695_040 Hb_042083_020--Hb_002110_220 Hb_042083_020--Hb_002387_030 Hb_042083_020--Hb_003940_060 Hb_042083_020--Hb_007810_080 Hb_042083_020--Hb_029695_040 Hb_002110_220--Hb_002387_030 Hb_002110_220--Hb_007810_080 Hb_174662_020 Hb_174662_020 Hb_002110_220--Hb_174662_020 Hb_000501_080 Hb_000501_080 Hb_002110_220--Hb_000501_080 Hb_002387_030--Hb_003940_060 Hb_002387_030--Hb_029695_040 Hb_001234_090 Hb_001234_090 Hb_002387_030--Hb_001234_090 Hb_007810_080--Hb_174662_020 Hb_007810_080--Hb_000501_080 Hb_021888_160 Hb_021888_160 Hb_007810_080--Hb_021888_160 Hb_000575_050 Hb_000575_050 Hb_007810_080--Hb_000575_050 Hb_006907_110 Hb_006907_110 Hb_007810_080--Hb_006907_110 Hb_003940_060--Hb_029695_040 Hb_003940_060--Hb_001234_090 Hb_186634_010 Hb_186634_010 Hb_003940_060--Hb_186634_010 Hb_118909_010 Hb_118909_010 Hb_003940_060--Hb_118909_010 Hb_108160_010 Hb_108160_010 Hb_003940_060--Hb_108160_010 Hb_029695_040--Hb_001234_090 Hb_029695_040--Hb_186634_010 Hb_029695_040--Hb_118909_010 Hb_029695_040--Hb_108160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0229358 0.0306602

CAGE analysis