Hb_007625_010

Information

Type -
Description -
Location Contig7625: 18844-20281
Sequence    

Annotation

kegg
ID rcu:RCOM_1587890
description hypothetical protein
nr
ID XP_002510114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R721
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57314: 18891-20460 , PASA_asmbl_57315: 19031-20388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007625_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001956_130 0.1280575929 - - catalytic, putative [Ricinus communis]
3 Hb_006816_380 0.1292512917 - - PREDICTED: kinesin-4-like [Jatropha curcas]
4 Hb_000915_170 0.1299858717 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
5 Hb_002200_030 0.1301305966 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
6 Hb_000103_200 0.1331764774 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_000816_140 0.1362081585 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
8 Hb_000951_150 0.1380787422 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
9 Hb_000057_090 0.1402079475 - - hypothetical protein RCOM_1494490 [Ricinus communis]
10 Hb_012653_050 0.1413648175 - - hypothetical protein RCOM_0460020 [Ricinus communis]
11 Hb_000358_260 0.1421223692 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
12 Hb_010810_060 0.1422436633 - - sterol desaturase, putative [Ricinus communis]
13 Hb_005181_140 0.1425767723 - - hypothetical protein JCGZ_19000 [Jatropha curcas]
14 Hb_003583_010 0.1434510946 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
15 Hb_012055_070 0.1438395693 - - calcium ion binding protein, putative [Ricinus communis]
16 Hb_001817_210 0.145351224 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004079_070 0.1454652712 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
18 Hb_000617_360 0.1480913359 - - conserved hypothetical protein [Ricinus communis]
19 Hb_052530_020 0.1489702229 - - cytochrome B5 isoform 1, putative [Ricinus communis]
20 Hb_149694_010 0.1526484784 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007625_010 Hb_007625_010 Hb_001956_130 Hb_001956_130 Hb_007625_010--Hb_001956_130 Hb_006816_380 Hb_006816_380 Hb_007625_010--Hb_006816_380 Hb_000915_170 Hb_000915_170 Hb_007625_010--Hb_000915_170 Hb_002200_030 Hb_002200_030 Hb_007625_010--Hb_002200_030 Hb_000103_200 Hb_000103_200 Hb_007625_010--Hb_000103_200 Hb_000816_140 Hb_000816_140 Hb_007625_010--Hb_000816_140 Hb_002221_060 Hb_002221_060 Hb_001956_130--Hb_002221_060 Hb_001956_130--Hb_000816_140 Hb_000003_380 Hb_000003_380 Hb_001956_130--Hb_000003_380 Hb_010883_170 Hb_010883_170 Hb_001956_130--Hb_010883_170 Hb_012653_050 Hb_012653_050 Hb_001956_130--Hb_012653_050 Hb_000358_260 Hb_000358_260 Hb_001956_130--Hb_000358_260 Hb_006816_380--Hb_000915_170 Hb_012395_240 Hb_012395_240 Hb_006816_380--Hb_012395_240 Hb_006816_380--Hb_000358_260 Hb_000928_030 Hb_000928_030 Hb_006816_380--Hb_000928_030 Hb_052530_020 Hb_052530_020 Hb_006816_380--Hb_052530_020 Hb_006816_380--Hb_000103_200 Hb_000915_170--Hb_000358_260 Hb_007904_150 Hb_007904_150 Hb_000915_170--Hb_007904_150 Hb_001981_050 Hb_001981_050 Hb_000915_170--Hb_001981_050 Hb_002740_050 Hb_002740_050 Hb_000915_170--Hb_002740_050 Hb_185811_010 Hb_185811_010 Hb_000915_170--Hb_185811_010 Hb_005656_120 Hb_005656_120 Hb_002200_030--Hb_005656_120 Hb_128986_010 Hb_128986_010 Hb_002200_030--Hb_128986_010 Hb_003417_050 Hb_003417_050 Hb_002200_030--Hb_003417_050 Hb_002062_010 Hb_002062_010 Hb_002200_030--Hb_002062_010 Hb_006922_120 Hb_006922_120 Hb_002200_030--Hb_006922_120 Hb_000392_350 Hb_000392_350 Hb_002200_030--Hb_000392_350 Hb_004137_040 Hb_004137_040 Hb_000103_200--Hb_004137_040 Hb_000230_300 Hb_000230_300 Hb_000103_200--Hb_000230_300 Hb_000103_200--Hb_002221_060 Hb_005762_010 Hb_005762_010 Hb_000103_200--Hb_005762_010 Hb_000103_200--Hb_000928_030 Hb_000028_190 Hb_000028_190 Hb_000103_200--Hb_000028_190 Hb_000816_140--Hb_010883_170 Hb_007113_060 Hb_007113_060 Hb_000816_140--Hb_007113_060 Hb_000816_140--Hb_006922_120 Hb_000816_140--Hb_012653_050 Hb_000815_050 Hb_000815_050 Hb_000816_140--Hb_000815_050 Hb_000057_090 Hb_000057_090 Hb_000816_140--Hb_000057_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01677 1.68813 62.8682 112.267 2.42404 1.30722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.775126 3.95991 0.133726 0.124716 72.381

CAGE analysis