Hb_007625_020

Information

Type -
Description -
Location Contig7625: 36799-45310
Sequence    

Annotation

kegg
ID cmo:103484833
description casein kinase II subunit alpha
nr
ID XP_011069787.1
description PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
swissprot
ID Q08467
description Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=3
trembl
ID A0A022QA09
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009728mg PE=4 SV=1
Gene Ontology
ID GO:0004674
description casein kinase ii subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57318: 43086-43596 , PASA_asmbl_57319: 37055-44171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007625_020 0.0 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
2 Hb_004545_160 0.054791647 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_012305_060 0.0982641516 - - protein translocase, putative [Ricinus communis]
4 Hb_007451_030 0.0994789522 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
5 Hb_000366_100 0.1151933641 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
6 Hb_007992_030 0.124794231 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
7 Hb_000752_060 0.1251637916 - - expressed protein, putative [Ricinus communis]
8 Hb_012395_100 0.1258478 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
9 Hb_002863_010 0.1275740901 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_027472_090 0.1290311625 - - -
11 Hb_001109_120 0.130004134 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
12 Hb_036369_010 0.1304211519 - - -
13 Hb_000933_140 0.1305127982 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
14 Hb_000221_100 0.1314422392 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
15 Hb_001437_040 0.1316954219 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
16 Hb_001754_150 0.1319096684 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
17 Hb_000175_040 0.1322056645 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
18 Hb_000680_150 0.1337259968 - - PREDICTED: protein STU1-like [Jatropha curcas]
19 Hb_004204_030 0.1339356659 - - unknown [Populus trichocarpa]
20 Hb_000175_520 0.1366812666 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007625_020 Hb_007625_020 Hb_004545_160 Hb_004545_160 Hb_007625_020--Hb_004545_160 Hb_012305_060 Hb_012305_060 Hb_007625_020--Hb_012305_060 Hb_007451_030 Hb_007451_030 Hb_007625_020--Hb_007451_030 Hb_000366_100 Hb_000366_100 Hb_007625_020--Hb_000366_100 Hb_007992_030 Hb_007992_030 Hb_007625_020--Hb_007992_030 Hb_000752_060 Hb_000752_060 Hb_007625_020--Hb_000752_060 Hb_004545_160--Hb_012305_060 Hb_004545_160--Hb_007451_030 Hb_004545_160--Hb_000366_100 Hb_012395_100 Hb_012395_100 Hb_004545_160--Hb_012395_100 Hb_003057_050 Hb_003057_050 Hb_004545_160--Hb_003057_050 Hb_000193_230 Hb_000193_230 Hb_012305_060--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_012305_060--Hb_000078_030 Hb_000284_010 Hb_000284_010 Hb_012305_060--Hb_000284_010 Hb_012305_060--Hb_007451_030 Hb_007451_030--Hb_000193_230 Hb_001804_040 Hb_001804_040 Hb_007451_030--Hb_001804_040 Hb_000680_150 Hb_000680_150 Hb_007451_030--Hb_000680_150 Hb_000189_530 Hb_000189_530 Hb_000366_100--Hb_000189_530 Hb_036369_010 Hb_036369_010 Hb_000366_100--Hb_036369_010 Hb_023675_010 Hb_023675_010 Hb_000366_100--Hb_023675_010 Hb_000366_100--Hb_000752_060 Hb_000617_320 Hb_000617_320 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010 Hb_004502_030 Hb_004502_030 Hb_007992_030--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_007992_030--Hb_000847_070 Hb_000345_560 Hb_000345_560 Hb_007992_030--Hb_000345_560 Hb_001514_020 Hb_001514_020 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_001437_040 Hb_001437_040 Hb_000752_060--Hb_001437_040 Hb_007166_050 Hb_007166_050 Hb_000752_060--Hb_007166_050 Hb_000752_060--Hb_007992_030 Hb_000752_060--Hb_000617_320 Hb_001019_090 Hb_001019_090 Hb_000752_060--Hb_001019_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
128.036 8.26628 10.0364 12.9822 86.1877 103.679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
142.782 145.26 32.0507 6.3009 4.52252

CAGE analysis