Hb_007625_030

Information

Type -
Description -
Location Contig7625: 44628-45453
Sequence    

Annotation

kegg
ID tcc:TCM_007197
description Leucine-rich repeat family protein
nr
ID AFK34204.1
description unknown [Medicago truncatula]
swissprot
ID O64818
description Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1
trembl
ID I3S1R2
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57321: 44661-45521 , PASA_asmbl_57322: 45196-45332
cDNA
(Sanger)
(ID:Location)		 012_N19.ab1: 44664-45520 , 013_O04.ab1: 44661-45478 , 014_K15.ab1: 44661-45478 , 029_G22.ab1: 44669-45515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007625_030 0.0 - - unknown [Medicago truncatula]
2 Hb_002236_010 0.0937707611 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
3 Hb_002553_070 0.1041535212 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
4 Hb_023956_010 0.1080123434 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_009627_020 0.1105719201 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
6 Hb_004079_100 0.1123308234 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
7 Hb_000454_200 0.1128798176 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
8 Hb_000847_050 0.1141505057 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
9 Hb_009838_120 0.1145951377 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
10 Hb_011129_020 0.1146477239 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
11 Hb_001048_070 0.1147405105 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
12 Hb_005679_120 0.115101054 - - hypothetical protein RCOM_0284080 [Ricinus communis]
13 Hb_000866_320 0.1180506419 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_006153_130 0.1188013615 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_000181_260 0.118875546 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
16 Hb_019026_050 0.1190362393 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003411_020 0.1194838661 - - alpha-glucosidase, putative [Ricinus communis]
18 Hb_008021_040 0.1198376678 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
19 Hb_002450_180 0.1219831394 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000120_320 0.1224441658 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_007625_030 Hb_007625_030 Hb_002236_010 Hb_002236_010 Hb_007625_030--Hb_002236_010 Hb_002553_070 Hb_002553_070 Hb_007625_030--Hb_002553_070 Hb_023956_010 Hb_023956_010 Hb_007625_030--Hb_023956_010 Hb_009627_020 Hb_009627_020 Hb_007625_030--Hb_009627_020 Hb_004079_100 Hb_004079_100 Hb_007625_030--Hb_004079_100 Hb_000454_200 Hb_000454_200 Hb_007625_030--Hb_000454_200 Hb_002236_010--Hb_002553_070 Hb_000070_070 Hb_000070_070 Hb_002236_010--Hb_000070_070 Hb_005679_120 Hb_005679_120 Hb_002236_010--Hb_005679_120 Hb_002236_010--Hb_023956_010 Hb_000571_060 Hb_000571_060 Hb_002236_010--Hb_000571_060 Hb_002553_070--Hb_023956_010 Hb_002553_070--Hb_000571_060 Hb_019026_050 Hb_019026_050 Hb_002553_070--Hb_019026_050 Hb_002553_070--Hb_005679_120 Hb_006846_030 Hb_006846_030 Hb_002553_070--Hb_006846_030 Hb_003847_050 Hb_003847_050 Hb_023956_010--Hb_003847_050 Hb_023956_010--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_023956_010--Hb_012787_050 Hb_023956_010--Hb_019026_050 Hb_009838_120 Hb_009838_120 Hb_009627_020--Hb_009838_120 Hb_000479_230 Hb_000479_230 Hb_009627_020--Hb_000479_230 Hb_024868_010 Hb_024868_010 Hb_009627_020--Hb_024868_010 Hb_009627_020--Hb_005679_120 Hb_004659_100 Hb_004659_100 Hb_009627_020--Hb_004659_100 Hb_000631_100 Hb_000631_100 Hb_009627_020--Hb_000631_100 Hb_022250_160 Hb_022250_160 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_008566_080 Hb_008566_080 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_000594_160 Hb_000594_160 Hb_004079_100--Hb_000594_160 Hb_002450_180 Hb_002450_180 Hb_000454_200--Hb_002450_180 Hb_000847_050 Hb_000847_050 Hb_000454_200--Hb_000847_050 Hb_003376_300 Hb_003376_300 Hb_000454_200--Hb_003376_300 Hb_000454_200--Hb_005679_120 Hb_000411_050 Hb_000411_050 Hb_000454_200--Hb_000411_050 Hb_001856_160 Hb_001856_160 Hb_000454_200--Hb_001856_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52322 60.3444 43.2379 125.424 0.483812 1.318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.789712 1.24084 0.702409 79.2231 30.6233

CAGE analysis