Hb_007632_020

Information

Type -
Description -
Location Contig7632: 23756-28297
Sequence    

Annotation

kegg
ID rcu:RCOM_0522480
description Pre-mRNA-splicing factor cwc23, putative
nr
ID XP_012071063.1
description PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
swissprot
ID Q2KI83
description DnaJ homolog subfamily C member 17 OS=Bos taurus GN=DNAJC17 PE=2 SV=1
trembl
ID A0A067L490
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01067 PE=4 SV=1
Gene Ontology
ID GO:0000166
description dnaj homolog subfamily c member 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57335: 23826-24240 , PASA_asmbl_57336: 24245-28186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_020 0.0 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
2 Hb_011609_080 0.0657432968 - - uv excision repair protein rad23, putative [Ricinus communis]
3 Hb_007590_080 0.0678577309 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
4 Hb_031042_070 0.0731497215 - - conserved hypothetical protein [Ricinus communis]
5 Hb_026099_010 0.0742366147 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
6 Hb_010931_080 0.0751364393 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
7 Hb_004370_030 0.0758667848 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
8 Hb_000789_080 0.0776287153 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
9 Hb_000100_070 0.078330099 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
10 Hb_000002_040 0.0788859288 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
11 Hb_164010_060 0.0802385996 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
12 Hb_002942_160 0.0806520105 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
13 Hb_002044_060 0.0816523814 - - elongation factor ts, putative [Ricinus communis]
14 Hb_000347_280 0.0821216656 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
15 Hb_007336_020 0.0833047471 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
16 Hb_007982_070 0.083635757 - - PREDICTED: protein CPR-5 [Jatropha curcas]
17 Hb_011942_080 0.0838657167 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
18 Hb_000794_050 0.0852689941 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
19 Hb_008253_010 0.085478531 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
20 Hb_004108_140 0.0865813405 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007632_020 Hb_007632_020 Hb_011609_080 Hb_011609_080 Hb_007632_020--Hb_011609_080 Hb_007590_080 Hb_007590_080 Hb_007632_020--Hb_007590_080 Hb_031042_070 Hb_031042_070 Hb_007632_020--Hb_031042_070 Hb_026099_010 Hb_026099_010 Hb_007632_020--Hb_026099_010 Hb_010931_080 Hb_010931_080 Hb_007632_020--Hb_010931_080 Hb_004370_030 Hb_004370_030 Hb_007632_020--Hb_004370_030 Hb_001486_340 Hb_001486_340 Hb_011609_080--Hb_001486_340 Hb_006355_010 Hb_006355_010 Hb_011609_080--Hb_006355_010 Hb_000390_180 Hb_000390_180 Hb_011609_080--Hb_000390_180 Hb_000498_010 Hb_000498_010 Hb_011609_080--Hb_000498_010 Hb_016461_010 Hb_016461_010 Hb_011609_080--Hb_016461_010 Hb_007336_020 Hb_007336_020 Hb_007590_080--Hb_007336_020 Hb_002007_350 Hb_002007_350 Hb_007590_080--Hb_002007_350 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_008253_010 Hb_008253_010 Hb_007590_080--Hb_008253_010 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_000803_300 Hb_000803_300 Hb_007590_080--Hb_000803_300 Hb_001633_040 Hb_001633_040 Hb_031042_070--Hb_001633_040 Hb_033883_060 Hb_033883_060 Hb_031042_070--Hb_033883_060 Hb_007982_070 Hb_007982_070 Hb_031042_070--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_031042_070--Hb_000300_360 Hb_002163_010 Hb_002163_010 Hb_031042_070--Hb_002163_010 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_002044_060 Hb_002044_060 Hb_026099_010--Hb_002044_060 Hb_026099_010--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_026099_010--Hb_000789_080 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_002942_160 Hb_002942_160 Hb_010931_080--Hb_002942_160 Hb_010931_080--Hb_004370_030 Hb_010931_080--Hb_000789_080 Hb_010931_080--Hb_026099_010 Hb_004934_090 Hb_004934_090 Hb_010931_080--Hb_004934_090 Hb_003362_040 Hb_003362_040 Hb_010931_080--Hb_003362_040 Hb_004370_030--Hb_002044_060 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_004370_030--Hb_002942_160 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8935 20.1089 12.1773 9.89514 24.2176 31.7362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0292 14.9339 12.3572 17.5742 11.168

CAGE analysis