Hb_007632_030

Information

Type -
Description -
Location Contig7632: 28304-50415
Sequence    

Annotation

kegg
ID rcu:RCOM_0522460
description hypothetical protein
nr
ID XP_012086261.1
description PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
swissprot
ID Q9LG26
description Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2
trembl
ID A0A067K130
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly -specific ribonuclease parn

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57337: 28518-29190 , PASA_asmbl_57338: 29548-41426 , PASA_asmbl_57339: 29548-41426 , PASA_asmbl_57343: 42162-45481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_030 0.0 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
2 Hb_000365_120 0.0636145219 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
3 Hb_009421_020 0.0673276841 - - PREDICTED: caltractin-like [Jatropha curcas]
4 Hb_156973_010 0.0674107899 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004841_010 0.0688302839 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
6 Hb_000120_790 0.0707672982 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
7 Hb_023386_020 0.070899239 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
8 Hb_001258_090 0.0716578012 - - PREDICTED: protein spt2-like [Jatropha curcas]
9 Hb_003125_160 0.0717492263 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
10 Hb_005697_060 0.0718911016 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
11 Hb_000883_020 0.07193915 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
12 Hb_009694_010 0.0732405614 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003939_050 0.0761582914 - - protein with unknown function [Ricinus communis]
14 Hb_028227_020 0.0762121379 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
15 Hb_004837_030 0.0801112533 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
16 Hb_008554_030 0.0807511753 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
17 Hb_000342_130 0.0830040673 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
18 Hb_007163_070 0.083053986 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
19 Hb_006502_090 0.0831090508 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
20 Hb_007075_040 0.0839948626 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_007632_030 Hb_007632_030 Hb_000365_120 Hb_000365_120 Hb_007632_030--Hb_000365_120 Hb_009421_020 Hb_009421_020 Hb_007632_030--Hb_009421_020 Hb_156973_010 Hb_156973_010 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_000120_790 Hb_000120_790 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020 Hb_000365_120--Hb_009421_020 Hb_001390_110 Hb_001390_110 Hb_000365_120--Hb_001390_110 Hb_002141_030 Hb_002141_030 Hb_000365_120--Hb_002141_030 Hb_000365_120--Hb_156973_010 Hb_005697_060 Hb_005697_060 Hb_000365_120--Hb_005697_060 Hb_000866_010 Hb_000866_010 Hb_009421_020--Hb_000866_010 Hb_001512_060 Hb_001512_060 Hb_009421_020--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_009421_020--Hb_000362_200 Hb_000329_320 Hb_000329_320 Hb_009421_020--Hb_000329_320 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_000853_230 Hb_000853_230 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_165928_020 Hb_165928_020 Hb_004841_010--Hb_165928_020 Hb_004841_010--Hb_023386_020 Hb_008643_210 Hb_008643_210 Hb_004841_010--Hb_008643_210 Hb_016172_020 Hb_016172_020 Hb_004841_010--Hb_016172_020 Hb_000856_110 Hb_000856_110 Hb_004841_010--Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_004841_010--Hb_004100_080 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.57926 3.95768 6.03332 3.96578 8.0636 9.31909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.35012 9.58007 5.9077 4.37989 7.40703

CAGE analysis