Hb_007632_100

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig7632: 86566-87207
Sequence    

Annotation

kegg
ID rcu:RCOM_0521850
description ccaat-binding transcription factor subunit A, putative
nr
ID XP_002522740.1
description ccaat-binding transcription factor subunit A, putative [Ricinus communis]
swissprot
ID Q9SFD8
description Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2
trembl
ID B9S9S1
description Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RCOM_0521850 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ccaat-binding transcription factor subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57357: 86928-87418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_100 0.0 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
2 Hb_053709_040 0.1328524292 - - putative actin-97 protein [Linum usitatissimum]
3 Hb_024074_020 0.1545010211 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
4 Hb_003207_150 0.1557949832 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
5 Hb_001366_170 0.156295605 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
6 Hb_003058_230 0.1578097859 - - copper ion binding protein, putative [Ricinus communis]
7 Hb_002660_110 0.1580852663 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
8 Hb_012339_010 0.1585976354 - - conserved hypothetical protein [Ricinus communis]
9 Hb_032143_020 0.1596131453 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
10 Hb_008185_020 0.1599047446 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
11 Hb_000622_350 0.1607047222 - - PREDICTED: protein ABIL1 [Jatropha curcas]
12 Hb_122636_010 0.1628645579 - - dienelactone hydrolase family protein [Populus trichocarpa]
13 Hb_000684_260 0.1653344251 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
14 Hb_000742_160 0.1656079916 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
15 Hb_006634_110 0.1674834413 - - BnaC04g40780D [Brassica napus]
16 Hb_006405_030 0.1676234544 - - hypothetical protein VITISV_043238 [Vitis vinifera]
17 Hb_008566_040 0.1716948836 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
18 Hb_000889_100 0.1740627714 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
19 Hb_000002_480 0.1753504425 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
20 Hb_000152_190 0.1764320012 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_007632_100 Hb_007632_100 Hb_053709_040 Hb_053709_040 Hb_007632_100--Hb_053709_040 Hb_024074_020 Hb_024074_020 Hb_007632_100--Hb_024074_020 Hb_003207_150 Hb_003207_150 Hb_007632_100--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_007632_100--Hb_001366_170 Hb_003058_230 Hb_003058_230 Hb_007632_100--Hb_003058_230 Hb_002660_110 Hb_002660_110 Hb_007632_100--Hb_002660_110 Hb_053709_040--Hb_003207_150 Hb_053709_040--Hb_001366_170 Hb_034726_010 Hb_034726_010 Hb_053709_040--Hb_034726_010 Hb_008185_020 Hb_008185_020 Hb_053709_040--Hb_008185_020 Hb_000177_110 Hb_000177_110 Hb_053709_040--Hb_000177_110 Hb_002046_150 Hb_002046_150 Hb_024074_020--Hb_002046_150 Hb_000002_480 Hb_000002_480 Hb_024074_020--Hb_000002_480 Hb_024074_020--Hb_002660_110 Hb_001008_200 Hb_001008_200 Hb_024074_020--Hb_001008_200 Hb_012651_010 Hb_012651_010 Hb_024074_020--Hb_012651_010 Hb_000172_510 Hb_000172_510 Hb_024074_020--Hb_000172_510 Hb_003207_150--Hb_000177_110 Hb_003207_150--Hb_034726_010 Hb_003207_150--Hb_001366_170 Hb_000671_130 Hb_000671_130 Hb_003207_150--Hb_000671_130 Hb_122636_010 Hb_122636_010 Hb_003207_150--Hb_122636_010 Hb_001902_200 Hb_001902_200 Hb_001366_170--Hb_001902_200 Hb_002490_030 Hb_002490_030 Hb_001366_170--Hb_002490_030 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210 Hb_054865_160 Hb_054865_160 Hb_003058_230--Hb_054865_160 Hb_003058_230--Hb_008185_020 Hb_003058_230--Hb_053709_040 Hb_001004_080 Hb_001004_080 Hb_003058_230--Hb_001004_080 Hb_001584_130 Hb_001584_130 Hb_003058_230--Hb_001584_130 Hb_003052_180 Hb_003052_180 Hb_002660_110--Hb_003052_180 Hb_000622_350 Hb_000622_350 Hb_002660_110--Hb_000622_350 Hb_002660_110--Hb_122636_010 Hb_000008_190 Hb_000008_190 Hb_002660_110--Hb_000008_190 Hb_003071_070 Hb_003071_070 Hb_002660_110--Hb_003071_070 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.078975 0.0333794 0.247245 0.803117 0.111232 0.110483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0914493 0.0718808 0.12691 0.0587345 0.140539

CAGE analysis