Hb_007632_110

Information

Type -
Description -
Location Contig7632: 89981-104027
Sequence    

Annotation

kegg
ID rcu:RCOM_0521870
description chromatin regulatory protein sir2, putative
nr
ID XP_002522742.1
description chromatin regulatory protein sir2, putative [Ricinus communis]
swissprot
ID Q9FE17
description NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1
trembl
ID B9S9S3
description Chromatin regulatory protein sir2, putative OS=Ricinus communis GN=RCOM_0521870 PE=4 SV=1
Gene Ontology
ID GO:0070403
description nad-dependent protein deacetylase srt1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57358: 91933-92496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_110 0.0 - - chromatin regulatory protein sir2, putative [Ricinus communis]
2 Hb_001105_010 0.0660412314 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
3 Hb_003467_010 0.0684022485 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
4 Hb_011942_080 0.0744233467 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
5 Hb_006355_010 0.0777617117 - - PREDICTED: protein NLRC3 [Jatropha curcas]
6 Hb_004450_060 0.0794116696 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
7 Hb_000207_130 0.0827155196 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
8 Hb_001405_120 0.0841435317 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
9 Hb_011609_080 0.0844562653 - - uv excision repair protein rad23, putative [Ricinus communis]
10 Hb_003058_110 0.0862652304 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
11 Hb_001357_380 0.0862778396 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000368_020 0.0871876077 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
13 Hb_008803_090 0.0879539167 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
14 Hb_031939_010 0.0887445169 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
15 Hb_029920_050 0.0901148125 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
16 Hb_007026_030 0.090250217 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
17 Hb_002675_260 0.0919921154 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
18 Hb_106552_050 0.093291994 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
19 Hb_178968_100 0.0937101681 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
20 Hb_001635_170 0.0942528131 - - hypothetical protein JCGZ_24811 [Jatropha curcas]

Gene co-expression network

sample Hb_007632_110 Hb_007632_110 Hb_001105_010 Hb_001105_010 Hb_007632_110--Hb_001105_010 Hb_003467_010 Hb_003467_010 Hb_007632_110--Hb_003467_010 Hb_011942_080 Hb_011942_080 Hb_007632_110--Hb_011942_080 Hb_006355_010 Hb_006355_010 Hb_007632_110--Hb_006355_010 Hb_004450_060 Hb_004450_060 Hb_007632_110--Hb_004450_060 Hb_000207_130 Hb_000207_130 Hb_007632_110--Hb_000207_130 Hb_135377_010 Hb_135377_010 Hb_001105_010--Hb_135377_010 Hb_001105_010--Hb_003467_010 Hb_001105_010--Hb_006355_010 Hb_009222_010 Hb_009222_010 Hb_001105_010--Hb_009222_010 Hb_000392_050 Hb_000392_050 Hb_001105_010--Hb_000392_050 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_003467_010--Hb_011942_080 Hb_003849_060 Hb_003849_060 Hb_003467_010--Hb_003849_060 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_000179_030 Hb_000179_030 Hb_006355_010--Hb_000179_030 Hb_002175_030 Hb_002175_030 Hb_006355_010--Hb_002175_030 Hb_000334_270 Hb_000334_270 Hb_006355_010--Hb_000334_270 Hb_001486_340 Hb_001486_340 Hb_006355_010--Hb_001486_340 Hb_000771_180 Hb_000771_180 Hb_006355_010--Hb_000771_180 Hb_005337_090 Hb_005337_090 Hb_006355_010--Hb_005337_090 Hb_011848_010 Hb_011848_010 Hb_004450_060--Hb_011848_010 Hb_178968_100 Hb_178968_100 Hb_004450_060--Hb_178968_100 Hb_003091_010 Hb_003091_010 Hb_004450_060--Hb_003091_010 Hb_004450_060--Hb_003849_060 Hb_000359_330 Hb_000359_330 Hb_004450_060--Hb_000359_330 Hb_004055_150 Hb_004055_150 Hb_000207_130--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_000207_130--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_000207_130--Hb_000853_230 Hb_032208_040 Hb_032208_040 Hb_000207_130--Hb_032208_040 Hb_106552_050 Hb_106552_050 Hb_000207_130--Hb_106552_050 Hb_002078_020 Hb_002078_020 Hb_000207_130--Hb_002078_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.57275 3.04533 4.46394 2.16411 5.52391 6.22917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.75609 3.99149 2.43409 3.30489 1.39957

CAGE analysis