Hb_007632_220

Information

Type -
Description -
Location Contig7632: 181535-183607
Sequence    

Annotation

kegg
ID rcu:RCOM_0522060
description RNA-binding protein, putative
nr
ID XP_002522751.1
description RNA-binding protein, putative [Ricinus communis]
swissprot
ID F1QBY1
description Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
trembl
ID B9S9T2
description RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0522060 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cleavage and polyadenylation specificity factor subunit 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57369: 183447-185500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_220 0.0 - - RNA-binding protein, putative [Ricinus communis]
2 Hb_085781_010 0.0847403224 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
3 Hb_000047_030 0.0865691372 - - tfiif-alpha, putative [Ricinus communis]
4 Hb_000574_390 0.0910030955 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
5 Hb_013405_030 0.0928936793 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002686_290 0.0972503841 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
7 Hb_015198_020 0.0974248754 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006472_010 0.0978253049 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
9 Hb_012799_180 0.1027127414 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
10 Hb_000707_050 0.1098264644 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
11 Hb_000173_230 0.11082523 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
12 Hb_007416_270 0.1132124782 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
13 Hb_011242_040 0.113558188 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_001898_160 0.1153408306 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
15 Hb_000080_190 0.1154001655 - - -
16 Hb_001277_330 0.1156023224 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
17 Hb_000796_220 0.1157087492 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
18 Hb_000236_070 0.117362977 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000143_030 0.117993645 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
20 Hb_001019_190 0.1205474398 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007632_220 Hb_007632_220 Hb_085781_010 Hb_085781_010 Hb_007632_220--Hb_085781_010 Hb_000047_030 Hb_000047_030 Hb_007632_220--Hb_000047_030 Hb_000574_390 Hb_000574_390 Hb_007632_220--Hb_000574_390 Hb_013405_030 Hb_013405_030 Hb_007632_220--Hb_013405_030 Hb_002686_290 Hb_002686_290 Hb_007632_220--Hb_002686_290 Hb_015198_020 Hb_015198_020 Hb_007632_220--Hb_015198_020 Hb_000796_220 Hb_000796_220 Hb_085781_010--Hb_000796_220 Hb_012799_180 Hb_012799_180 Hb_085781_010--Hb_012799_180 Hb_007951_050 Hb_007951_050 Hb_085781_010--Hb_007951_050 Hb_009048_040 Hb_009048_040 Hb_085781_010--Hb_009048_040 Hb_011673_030 Hb_011673_030 Hb_085781_010--Hb_011673_030 Hb_000047_030--Hb_015198_020 Hb_000047_030--Hb_000574_390 Hb_000928_210 Hb_000928_210 Hb_000047_030--Hb_000928_210 Hb_000047_030--Hb_013405_030 Hb_004724_080 Hb_004724_080 Hb_000047_030--Hb_004724_080 Hb_001140_220 Hb_001140_220 Hb_000047_030--Hb_001140_220 Hb_000574_390--Hb_013405_030 Hb_000574_390--Hb_015198_020 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000574_390--Hb_086639_040 Hb_011242_040 Hb_011242_040 Hb_000574_390--Hb_011242_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_013405_030--Hb_015198_020 Hb_000179_210 Hb_000179_210 Hb_002686_290--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_002686_290--Hb_000614_230 Hb_171900_080 Hb_171900_080 Hb_002686_290--Hb_171900_080 Hb_006816_140 Hb_006816_140 Hb_002686_290--Hb_006816_140 Hb_003266_130 Hb_003266_130 Hb_002686_290--Hb_003266_130 Hb_001085_170 Hb_001085_170 Hb_002686_290--Hb_001085_170 Hb_015198_020--Hb_011242_040 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_001898_160 Hb_001898_160 Hb_015198_020--Hb_001898_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71569 3.34527 3.51412 2.74141 12.0979 10.7861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.54591 11.4517 20.3437 4.84634 10.5066

CAGE analysis