Hb_007632_230

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig7632: 194428-194988
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37620g
description POPTRDRAFT_1070047; hypothetical protein
nr
ID XP_012071013.1
description PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
swissprot
ID O23310
description Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1
trembl
ID A0A067L465
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01032 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57370: 194172-195276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_230 0.0 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
2 Hb_001221_070 0.0581252275 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
3 Hb_001277_370 0.0641466402 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
4 Hb_004553_040 0.069556041 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_000319_010 0.0774287539 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
6 Hb_054926_010 0.0838247924 - - glutamate receptor 2 plant, putative [Ricinus communis]
7 Hb_007357_010 0.0998630914 - - cytochrome P450, putative [Ricinus communis]
8 Hb_008019_010 0.103083247 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
9 Hb_018134_010 0.1052254327 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
10 Hb_167206_010 0.1058079283 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
11 Hb_004040_010 0.1101717079 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
12 Hb_124677_090 0.1168507534 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001477_060 0.1178027673 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
14 Hb_018563_010 0.1178098875 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
15 Hb_008406_060 0.1245366638 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
16 Hb_000418_060 0.126181657 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
17 Hb_006002_020 0.1300368691 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
18 Hb_000103_370 0.13107359 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
19 Hb_001254_020 0.1338119021 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_161103_010 0.1367955457 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007632_230 Hb_007632_230 Hb_001221_070 Hb_001221_070 Hb_007632_230--Hb_001221_070 Hb_001277_370 Hb_001277_370 Hb_007632_230--Hb_001277_370 Hb_004553_040 Hb_004553_040 Hb_007632_230--Hb_004553_040 Hb_000319_010 Hb_000319_010 Hb_007632_230--Hb_000319_010 Hb_054926_010 Hb_054926_010 Hb_007632_230--Hb_054926_010 Hb_007357_010 Hb_007357_010 Hb_007632_230--Hb_007357_010 Hb_001221_070--Hb_001277_370 Hb_001221_070--Hb_004553_040 Hb_001221_070--Hb_007357_010 Hb_167206_010 Hb_167206_010 Hb_001221_070--Hb_167206_010 Hb_001221_070--Hb_000319_010 Hb_001277_370--Hb_004553_040 Hb_001277_370--Hb_167206_010 Hb_001277_370--Hb_007357_010 Hb_001277_370--Hb_000319_010 Hb_004553_040--Hb_167206_010 Hb_004553_040--Hb_000319_010 Hb_018563_010 Hb_018563_010 Hb_004553_040--Hb_018563_010 Hb_004040_010 Hb_004040_010 Hb_000319_010--Hb_004040_010 Hb_000319_010--Hb_167206_010 Hb_002374_030 Hb_002374_030 Hb_000319_010--Hb_002374_030 Hb_008019_010 Hb_008019_010 Hb_054926_010--Hb_008019_010 Hb_054926_010--Hb_004040_010 Hb_000103_370 Hb_000103_370 Hb_054926_010--Hb_000103_370 Hb_007123_010 Hb_007123_010 Hb_054926_010--Hb_007123_010 Hb_018134_010 Hb_018134_010 Hb_054926_010--Hb_018134_010 Hb_001477_060 Hb_001477_060 Hb_007357_010--Hb_001477_060 Hb_124677_090 Hb_124677_090 Hb_007357_010--Hb_124677_090 Hb_001715_060 Hb_001715_060 Hb_007357_010--Hb_001715_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0480099 16.6163 20.1264 17.6703 0.0902377 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.25325 10.9235

CAGE analysis