Hb_007632_240

Information

Type -
Description -
Location Contig7632: 198219-204314
Sequence    

Annotation

kegg
ID rcu:RCOM_0522080
description transporter, putative
nr
ID XP_002522753.1
description transporter, putative [Ricinus communis]
swissprot
ID P35659
description Protein DEK OS=Homo sapiens GN=DEK PE=1 SV=1
trembl
ID B9S9T4
description Transporter, putative OS=Ricinus communis GN=RCOM_0522080 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna ligase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57371: 198229-203831 , PASA_asmbl_57372: 198229-204769 , PASA_asmbl_57373: 199554-199812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_240 0.0 - - transporter, putative [Ricinus communis]
2 Hb_003847_130 0.0589275164 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
3 Hb_000638_120 0.0655682597 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
4 Hb_003438_050 0.0676247853 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
5 Hb_003025_110 0.0678261693 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
6 Hb_003375_070 0.0720347095 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
7 Hb_004410_030 0.0728570398 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001442_040 0.0729011389 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
9 Hb_000617_180 0.0766542284 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
10 Hb_000032_280 0.0768397907 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
11 Hb_004954_070 0.0773386431 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
12 Hb_000333_060 0.0795061514 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
13 Hb_002631_170 0.0796156533 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
14 Hb_001289_080 0.0811697695 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_000139_370 0.0813031553 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
16 Hb_002271_030 0.0817237931 - - Vacuolar protein sorting protein, putative [Ricinus communis]
17 Hb_004963_030 0.0838369015 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_001040_100 0.0841081893 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
19 Hb_012733_030 0.0844369898 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
20 Hb_000920_210 0.0848007799 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_007632_240 Hb_007632_240 Hb_003847_130 Hb_003847_130 Hb_007632_240--Hb_003847_130 Hb_000638_120 Hb_000638_120 Hb_007632_240--Hb_000638_120 Hb_003438_050 Hb_003438_050 Hb_007632_240--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_007632_240--Hb_003025_110 Hb_003375_070 Hb_003375_070 Hb_007632_240--Hb_003375_070 Hb_004410_030 Hb_004410_030 Hb_007632_240--Hb_004410_030 Hb_001442_040 Hb_001442_040 Hb_003847_130--Hb_001442_040 Hb_007645_100 Hb_007645_100 Hb_003847_130--Hb_007645_100 Hb_000466_140 Hb_000466_140 Hb_003847_130--Hb_000466_140 Hb_002592_060 Hb_002592_060 Hb_003847_130--Hb_002592_060 Hb_003847_130--Hb_004410_030 Hb_001289_080 Hb_001289_080 Hb_000638_120--Hb_001289_080 Hb_000638_120--Hb_003438_050 Hb_000638_120--Hb_003025_110 Hb_004689_050 Hb_004689_050 Hb_000638_120--Hb_004689_050 Hb_009467_060 Hb_009467_060 Hb_000638_120--Hb_009467_060 Hb_003438_050--Hb_003025_110 Hb_001040_100 Hb_001040_100 Hb_003438_050--Hb_001040_100 Hb_023480_010 Hb_023480_010 Hb_003438_050--Hb_023480_010 Hb_003010_020 Hb_003010_020 Hb_003438_050--Hb_003010_020 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_001135_220 Hb_001135_220 Hb_003375_070--Hb_001135_220 Hb_000139_370 Hb_000139_370 Hb_003375_070--Hb_000139_370 Hb_003375_070--Hb_011930_160 Hb_002273_120 Hb_002273_120 Hb_003375_070--Hb_002273_120 Hb_003375_070--Hb_003025_110 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_004410_030--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7661 23.6967 27.5251 22.6909 46.7947 52.4965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9403 27.8881 21.836 49.177 38.1472

CAGE analysis