Hb_007632_250

Information

Type -
Description -
Location Contig7632: 205575-207796
Sequence    

Annotation

kegg
ID rcu:RCOM_0522210
description hypothetical protein
nr
ID XP_002522756.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9T7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0522210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57374: 205597-207768
cDNA
(Sanger)
(ID:Location)		 004_F02.ab1: 205623-207766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000617_320 0.0707254925 - - 40S ribosomal protein S21B [Hevea brasiliensis]
3 Hb_003911_040 0.0737242578 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
4 Hb_119583_010 0.0768853459 - - 60S ribosomal protein L12A [Hevea brasiliensis]
5 Hb_004502_030 0.0850760396 - - unknown [Populus trichocarpa]
6 Hb_027892_060 0.0873403388 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
7 Hb_017895_050 0.0891990431 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
8 Hb_006637_060 0.0914057511 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
9 Hb_134226_010 0.0942770744 - - 40S ribosomal protein S21e, putative [Ricinus communis]
10 Hb_000847_070 0.0949217374 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
11 Hb_000622_100 0.0952376997 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
12 Hb_007992_030 0.0968032118 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
13 Hb_000997_060 0.0972608559 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
14 Hb_003106_130 0.0990525917 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
15 Hb_001514_020 0.1011348148 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
16 Hb_003633_130 0.1011454928 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
17 Hb_004204_030 0.1035198233 - - unknown [Populus trichocarpa]
18 Hb_000258_410 0.1040873565 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
19 Hb_044662_040 0.1058271426 - - -
20 Hb_003086_110 0.1061821097 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]

Gene co-expression network

sample Hb_007632_250 Hb_007632_250 Hb_000617_320 Hb_000617_320 Hb_007632_250--Hb_000617_320 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_119583_010 Hb_119583_010 Hb_007632_250--Hb_119583_010 Hb_004502_030 Hb_004502_030 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_007166_050 Hb_007166_050 Hb_000617_320--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000617_320--Hb_001019_090 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_000035_380 Hb_000035_380 Hb_003911_040--Hb_000035_380 Hb_000997_060 Hb_000997_060 Hb_003911_040--Hb_000997_060 Hb_003911_040--Hb_017895_050 Hb_006637_060 Hb_006637_060 Hb_003911_040--Hb_006637_060 Hb_003911_040--Hb_119583_010 Hb_003633_130 Hb_003633_130 Hb_119583_010--Hb_003633_130 Hb_003106_130 Hb_003106_130 Hb_119583_010--Hb_003106_130 Hb_119583_010--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_119583_010--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_119583_010--Hb_002997_170 Hb_004502_030--Hb_000847_070 Hb_007992_030 Hb_007992_030 Hb_004502_030--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_004502_030--Hb_003633_130 Hb_002942_020 Hb_002942_020 Hb_027892_060--Hb_002942_020 Hb_027892_060--Hb_017895_050 Hb_033491_010 Hb_033491_010 Hb_027892_060--Hb_033491_010 Hb_027892_060--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_027892_060--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_027892_060--Hb_001369_060 Hb_003453_010 Hb_003453_010 Hb_017895_050--Hb_003453_010 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_098709_010 Hb_098709_010 Hb_017895_050--Hb_098709_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
202.699 39.6448 33.5015 30.6081 187.479 278.977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
200.457 204.165 56.3015 58.982 18.012

CAGE analysis