Hb_007634_020

Information

Type -
Description -
Location Contig7634: 75679-77842
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007634_020 0.0 - - -
2 Hb_002026_230 0.129223554 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
3 Hb_000525_040 0.1547564429 - - -
4 Hb_000156_030 0.1597717317 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005568_070 0.1621752822 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
6 Hb_156144_020 0.1651935988 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
7 Hb_001892_160 0.1720161212 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
8 Hb_000175_530 0.1731116587 - - PREDICTED: uncharacterized protein LOC105136409 [Populus euphratica]
9 Hb_027998_030 0.1738754499 - - laccase, putative [Ricinus communis]
10 Hb_004307_040 0.1823105573 - - -
11 Hb_011616_030 0.1830408466 - - -
12 Hb_001691_050 0.1845414376 - - -
13 Hb_000161_100 0.1849333475 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
14 Hb_031862_170 0.1852218714 - - immunophilin, putative [Ricinus communis]
15 Hb_002609_100 0.1860928145 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
16 Hb_000329_540 0.1873105929 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
17 Hb_032264_130 0.1904212 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
18 Hb_012150_070 0.1922517288 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
19 Hb_000018_160 0.1947171971 - - nitrate transporter, putative [Ricinus communis]
20 Hb_000094_390 0.1956399274 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_007634_020 Hb_007634_020 Hb_002026_230 Hb_002026_230 Hb_007634_020--Hb_002026_230 Hb_000525_040 Hb_000525_040 Hb_007634_020--Hb_000525_040 Hb_000156_030 Hb_000156_030 Hb_007634_020--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_007634_020--Hb_005568_070 Hb_156144_020 Hb_156144_020 Hb_007634_020--Hb_156144_020 Hb_001892_160 Hb_001892_160 Hb_007634_020--Hb_001892_160 Hb_000836_050 Hb_000836_050 Hb_002026_230--Hb_000836_050 Hb_012150_070 Hb_012150_070 Hb_002026_230--Hb_012150_070 Hb_002609_100 Hb_002609_100 Hb_002026_230--Hb_002609_100 Hb_002026_230--Hb_005568_070 Hb_000018_160 Hb_000018_160 Hb_002026_230--Hb_000018_160 Hb_010368_070 Hb_010368_070 Hb_000525_040--Hb_010368_070 Hb_002903_120 Hb_002903_120 Hb_000525_040--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_000525_040--Hb_004032_460 Hb_019936_010 Hb_019936_010 Hb_000525_040--Hb_019936_010 Hb_011616_030 Hb_011616_030 Hb_000525_040--Hb_011616_030 Hb_003540_140 Hb_003540_140 Hb_000156_030--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_000156_030--Hb_000329_540 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_000156_030--Hb_004032_460 Hb_000441_230 Hb_000441_230 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_005568_070--Hb_000329_540 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_005568_070--Hb_003540_140 Hb_156144_020--Hb_001892_160 Hb_000175_530 Hb_000175_530 Hb_156144_020--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_156144_020--Hb_000580_060 Hb_003494_260 Hb_003494_260 Hb_156144_020--Hb_003494_260 Hb_001017_100 Hb_001017_100 Hb_156144_020--Hb_001017_100 Hb_171554_020 Hb_171554_020 Hb_001892_160--Hb_171554_020 Hb_000007_310 Hb_000007_310 Hb_001892_160--Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_001892_160--Hb_132629_010 Hb_000153_020 Hb_000153_020 Hb_001892_160--Hb_000153_020 Hb_177627_010 Hb_177627_010 Hb_001892_160--Hb_177627_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.6654 2.4738 1.19414 0.0537432 43.7526 23.2244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47703 2.25931 2.94834 0.5528 0.633299

CAGE analysis