Hb_007635_030

Information

Type -
Description -
Location Contig7635: 50213-51577
Sequence    

Annotation

kegg
ID rcu:RCOM_0867410
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012077493.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9FVX2
description Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2
trembl
ID A0A067LEI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17255 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57376: 50405-50561 , PASA_asmbl_57377: 50674-50896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007635_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
2 Hb_001454_280 0.0504465452 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
3 Hb_008112_030 0.0520540942 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002174_020 0.0551261856 - - ring finger protein, putative [Ricinus communis]
5 Hb_002329_040 0.058236711 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
6 Hb_002107_070 0.0602887272 - - hypothetical protein RCOM_1598630 [Ricinus communis]
7 Hb_009615_170 0.0647756873 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
8 Hb_004453_110 0.0648831146 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
9 Hb_012395_140 0.0654409288 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
10 Hb_008103_060 0.0663752037 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
11 Hb_001195_320 0.0666084286 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
12 Hb_002615_090 0.0668335804 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
13 Hb_009175_020 0.0670389127 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
14 Hb_004129_070 0.0684866544 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
15 Hb_104061_020 0.0690800647 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
16 Hb_006252_020 0.0691481668 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
17 Hb_000174_060 0.0716373695 - - zinc finger family protein [Populus trichocarpa]
18 Hb_004884_150 0.0719106213 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
19 Hb_140049_040 0.0724492113 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
20 Hb_014361_070 0.0729892543 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_007635_030 Hb_007635_030 Hb_001454_280 Hb_001454_280 Hb_007635_030--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_007635_030--Hb_008112_030 Hb_002174_020 Hb_002174_020 Hb_007635_030--Hb_002174_020 Hb_002329_040 Hb_002329_040 Hb_007635_030--Hb_002329_040 Hb_002107_070 Hb_002107_070 Hb_007635_030--Hb_002107_070 Hb_009615_170 Hb_009615_170 Hb_007635_030--Hb_009615_170 Hb_001140_350 Hb_001140_350 Hb_001454_280--Hb_001140_350 Hb_001454_280--Hb_002174_020 Hb_006252_020 Hb_006252_020 Hb_001454_280--Hb_006252_020 Hb_001454_280--Hb_008112_030 Hb_003680_150 Hb_003680_150 Hb_001454_280--Hb_003680_150 Hb_008112_030--Hb_002174_020 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_005731_090 Hb_005731_090 Hb_008112_030--Hb_005731_090 Hb_008112_030--Hb_006252_020 Hb_002174_020--Hb_006252_020 Hb_000160_290 Hb_000160_290 Hb_002174_020--Hb_000160_290 Hb_002174_020--Hb_005731_090 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_009615_170--Hb_001821_090 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.53094 8.92864 4.12412 6.12997 9.33351 7.54586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65807 4.11107 4.41137 6.7811 5.02456

CAGE analysis