Hb_007638_030

Information

Type -
Description -
Location Contig7638: 46796-55741
Sequence    

Annotation

kegg
ID rcu:RCOM_0812140
description phosphoprotein phosphatase, putative (EC:3.1.3.67)
nr
ID XP_012065393.1
description PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
swissprot
ID Q8T9S7
description Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1
trembl
ID A0A067LF72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22122 PE=4 SV=1
Gene Ontology
ID GO:0005829
description phosphatidylinositol -trisphosphate 3-phosphatase and dual-specificity protein phosphatase pten

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57384: 46875-55769 , PASA_asmbl_57386: 53787-54199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007638_030 0.0 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
2 Hb_000159_090 0.0484456367 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
3 Hb_010964_040 0.0556394653 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
4 Hb_000140_280 0.0557517222 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
5 Hb_000429_150 0.0573282064 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
6 Hb_004567_090 0.063035147 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
7 Hb_002110_190 0.0630821487 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
8 Hb_000192_080 0.0641340654 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
9 Hb_054865_150 0.0691066497 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
10 Hb_012322_010 0.0704210676 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_002213_070 0.0723346422 - - epsilon-adaptin family protein [Populus trichocarpa]
12 Hb_003683_020 0.072405707 - - serine/threonine protein kinase, putative [Ricinus communis]
13 Hb_012498_010 0.0724415415 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
14 Hb_000318_290 0.0760709879 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
15 Hb_007479_040 0.0786222507 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000003_590 0.0795501214 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
17 Hb_001571_050 0.0803475826 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
18 Hb_000111_320 0.0816615649 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
19 Hb_001500_140 0.0822188141 - - pelota, putative [Ricinus communis]
20 Hb_001377_510 0.0826135021 - - ormdl, putative [Ricinus communis]

Gene co-expression network

sample Hb_007638_030 Hb_007638_030 Hb_000159_090 Hb_000159_090 Hb_007638_030--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_007638_030--Hb_010964_040 Hb_000140_280 Hb_000140_280 Hb_007638_030--Hb_000140_280 Hb_000429_150 Hb_000429_150 Hb_007638_030--Hb_000429_150 Hb_004567_090 Hb_004567_090 Hb_007638_030--Hb_004567_090 Hb_002110_190 Hb_002110_190 Hb_007638_030--Hb_002110_190 Hb_003683_020 Hb_003683_020 Hb_000159_090--Hb_003683_020 Hb_000159_090--Hb_000140_280 Hb_012498_010 Hb_012498_010 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_000159_090--Hb_010964_040 Hb_010964_040--Hb_004567_090 Hb_001279_150 Hb_001279_150 Hb_010964_040--Hb_001279_150 Hb_000200_020 Hb_000200_020 Hb_010964_040--Hb_000200_020 Hb_003750_050 Hb_003750_050 Hb_010964_040--Hb_003750_050 Hb_002481_080 Hb_002481_080 Hb_010964_040--Hb_002481_080 Hb_000140_280--Hb_000429_150 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190 Hb_099878_030 Hb_099878_030 Hb_000140_280--Hb_099878_030 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_004567_090--Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_004567_090--Hb_007479_040 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_054865_150 Hb_054865_150 Hb_004567_090--Hb_054865_150 Hb_002110_190--Hb_007479_040 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.56173 10.0121 7.59719 18.7434 11.2259 18.5237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1831 11.488 14.5196 16.8834 12.312

CAGE analysis