Hb_007643_050

Information

Type -
Description -
Location Contig7643: 57177-67562
Sequence    

Annotation

kegg
ID rcu:RCOM_1494390
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_002516045.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LK03
description Proline-rich receptor-like protein kinase PERK2 OS=Arabidopsis thaliana GN=PERK2 PE=2 SV=3
trembl
ID B9RQM6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494390 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57387: 66529-66789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007643_050 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002475_160 0.0638126232 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
3 Hb_011942_080 0.0709140987 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
4 Hb_001616_090 0.071079437 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
5 Hb_000116_110 0.0725387812 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
6 Hb_031091_010 0.0727108645 - - crooked neck protein, putative [Ricinus communis]
7 Hb_001158_220 0.0730516146 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
8 Hb_000645_150 0.0819059372 - - zinc finger protein, putative [Ricinus communis]
9 Hb_031862_180 0.0835854305 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
10 Hb_002942_160 0.0837061136 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
11 Hb_000333_100 0.0838172005 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
12 Hb_031939_010 0.0847734522 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_012799_110 0.0850294589 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
14 Hb_000684_420 0.0852290481 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
15 Hb_008695_120 0.0856585508 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
16 Hb_017259_010 0.0858676215 - - -
17 Hb_012305_070 0.0866429162 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000956_030 0.0868302358 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
19 Hb_002097_090 0.0884880131 - - Splicing factor 3A subunit, putative [Ricinus communis]
20 Hb_003581_120 0.0885501482 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]

Gene co-expression network

sample Hb_007643_050 Hb_007643_050 Hb_002475_160 Hb_002475_160 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_001616_090 Hb_001616_090 Hb_007643_050--Hb_001616_090 Hb_000116_110 Hb_000116_110 Hb_007643_050--Hb_000116_110 Hb_031091_010 Hb_031091_010 Hb_007643_050--Hb_031091_010 Hb_001158_220 Hb_001158_220 Hb_007643_050--Hb_001158_220 Hb_007336_020 Hb_007336_020 Hb_002475_160--Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_002475_160--Hb_007590_080 Hb_002475_160--Hb_001158_220 Hb_000645_150 Hb_000645_150 Hb_002475_160--Hb_000645_150 Hb_002475_160--Hb_011942_080 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_003467_010 Hb_003467_010 Hb_011942_080--Hb_003467_010 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_000186_280 Hb_000186_280 Hb_001616_090--Hb_000186_280 Hb_009411_020 Hb_009411_020 Hb_001616_090--Hb_009411_020 Hb_001616_090--Hb_031091_010 Hb_000684_420 Hb_000684_420 Hb_001616_090--Hb_000684_420 Hb_173178_020 Hb_173178_020 Hb_001616_090--Hb_173178_020 Hb_012305_070 Hb_012305_070 Hb_000116_110--Hb_012305_070 Hb_015941_030 Hb_015941_030 Hb_000116_110--Hb_015941_030 Hb_000116_110--Hb_002475_160 Hb_000236_370 Hb_000236_370 Hb_000116_110--Hb_000236_370 Hb_000265_150 Hb_000265_150 Hb_000116_110--Hb_000265_150 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_005016_170 Hb_005016_170 Hb_001158_220--Hb_005016_170 Hb_061908_010 Hb_061908_010 Hb_001158_220--Hb_061908_010 Hb_002107_160 Hb_002107_160 Hb_001158_220--Hb_002107_160 Hb_001380_020 Hb_001380_020 Hb_001158_220--Hb_001380_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.97725 3.95536 3.02904 2.38516 7.88531 11.3454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.66855 4.56237 2.22072 2.27397 1.74789

CAGE analysis