Hb_007643_060

Information

Type -
Description -
Location Contig7643: 75005-75447
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007643_060 0.0 - - -
2 Hb_000035_150 0.046761975 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
3 Hb_006615_220 0.0760107555 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
4 Hb_007951_020 0.0782451628 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
5 Hb_012691_010 0.0903721128 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
6 Hb_005743_010 0.0935901584 - - RING/U-box superfamily protein, putative [Theobroma cacao]
7 Hb_000343_010 0.0991219615 - - F3F9.11 [Arabidopsis thaliana]
8 Hb_003992_130 0.1029490889 - - unnamed protein product [Vitis vinifera]
9 Hb_001153_160 0.1085434051 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
10 Hb_004213_010 0.1085571285 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_003626_020 0.1169098758 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
12 Hb_005834_050 0.1200951353 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
13 Hb_006266_010 0.1227470376 - - unnamed protein product [Vitis vinifera]
14 Hb_008643_220 0.1311056189 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
15 Hb_028707_120 0.1348711462 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
16 Hb_108576_020 0.1350730612 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001579_190 0.1381542707 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001310_060 0.1389480822 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_007850_100 0.1393459778 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
20 Hb_002205_160 0.1423182895 - - chalcone isomerase [Hibiscus cannabinus]

Gene co-expression network

sample Hb_007643_060 Hb_007643_060 Hb_000035_150 Hb_000035_150 Hb_007643_060--Hb_000035_150 Hb_006615_220 Hb_006615_220 Hb_007643_060--Hb_006615_220 Hb_007951_020 Hb_007951_020 Hb_007643_060--Hb_007951_020 Hb_012691_010 Hb_012691_010 Hb_007643_060--Hb_012691_010 Hb_005743_010 Hb_005743_010 Hb_007643_060--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_007643_060--Hb_000343_010 Hb_003992_130 Hb_003992_130 Hb_000035_150--Hb_003992_130 Hb_000035_150--Hb_007951_020 Hb_000035_150--Hb_006615_220 Hb_003626_020 Hb_003626_020 Hb_000035_150--Hb_003626_020 Hb_004213_010 Hb_004213_010 Hb_000035_150--Hb_004213_010 Hb_006615_220--Hb_005743_010 Hb_006615_220--Hb_000343_010 Hb_006266_010 Hb_006266_010 Hb_006615_220--Hb_006266_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060 Hb_007951_020--Hb_003626_020 Hb_007951_020--Hb_012691_010 Hb_007951_020--Hb_005743_010 Hb_007951_020--Hb_000343_010 Hb_006294_030 Hb_006294_030 Hb_012691_010--Hb_006294_030 Hb_000471_030 Hb_000471_030 Hb_012691_010--Hb_000471_030 Hb_005834_050 Hb_005834_050 Hb_012691_010--Hb_005834_050 Hb_012691_010--Hb_005743_010 Hb_003592_060 Hb_003592_060 Hb_005743_010--Hb_003592_060 Hb_005743_010--Hb_006266_010 Hb_068804_070 Hb_068804_070 Hb_005743_010--Hb_068804_070 Hb_000343_010--Hb_000035_150 Hb_004607_020 Hb_004607_020 Hb_000343_010--Hb_004607_020 Hb_000343_010--Hb_003626_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.5769 112.703 21.606 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.32705 0 0 22.4336 26.2168

CAGE analysis