Hb_007645_080

Information

Type -
Description -
Location Contig7645: 26761-28671
Sequence    

Annotation

kegg
ID vvi:100246870
description putative pentatricopeptide repeat-containing protein At5g52630
nr
ID XP_012086111.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
swissprot
ID Q9LTF4
description Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
trembl
ID A0A067JQ52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21050 PE=4 SV=1
Gene Ontology
ID GO:0016554
description pentatricopeptide repeat-containing protein at5g52630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_080 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
2 Hb_003185_050 0.0952007554 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
3 Hb_002235_280 0.0966252027 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
4 Hb_019654_090 0.1018289383 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
5 Hb_000072_080 0.1024137462 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
6 Hb_000366_090 0.1025966703 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
7 Hb_000349_290 0.1053655344 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
8 Hb_002056_060 0.1056094888 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
9 Hb_001143_080 0.1075996844 - - PREDICTED: F-box protein 7 [Jatropha curcas]
10 Hb_003994_040 0.1143875314 - - -
11 Hb_116898_010 0.1151710217 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
12 Hb_019263_020 0.11620366 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
13 Hb_001638_020 0.1169562896 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000019_060 0.1183637915 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
15 Hb_001575_020 0.1191418804 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005568_120 0.119344992 - - Prephenate dehydratase [Hevea brasiliensis]
17 Hb_010608_050 0.1195567545 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
18 Hb_001338_040 0.1207110079 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000125_030 0.1209972445 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
20 Hb_003579_030 0.1218403072 - - phosphatase 2C family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007645_080 Hb_007645_080 Hb_003185_050 Hb_003185_050 Hb_007645_080--Hb_003185_050 Hb_002235_280 Hb_002235_280 Hb_007645_080--Hb_002235_280 Hb_019654_090 Hb_019654_090 Hb_007645_080--Hb_019654_090 Hb_000072_080 Hb_000072_080 Hb_007645_080--Hb_000072_080 Hb_000366_090 Hb_000366_090 Hb_007645_080--Hb_000366_090 Hb_000349_290 Hb_000349_290 Hb_007645_080--Hb_000349_290 Hb_003185_050--Hb_000349_290 Hb_152910_020 Hb_152910_020 Hb_003185_050--Hb_152910_020 Hb_002374_390 Hb_002374_390 Hb_003185_050--Hb_002374_390 Hb_000905_180 Hb_000905_180 Hb_003185_050--Hb_000905_180 Hb_003326_020 Hb_003326_020 Hb_003185_050--Hb_003326_020 Hb_001016_090 Hb_001016_090 Hb_003185_050--Hb_001016_090 Hb_019263_020 Hb_019263_020 Hb_002235_280--Hb_019263_020 Hb_002235_280--Hb_000072_080 Hb_000617_150 Hb_000617_150 Hb_002235_280--Hb_000617_150 Hb_008695_100 Hb_008695_100 Hb_002235_280--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_002235_280--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_002235_280--Hb_013607_040 Hb_000019_060 Hb_000019_060 Hb_019654_090--Hb_000019_060 Hb_002056_060 Hb_002056_060 Hb_019654_090--Hb_002056_060 Hb_034406_020 Hb_034406_020 Hb_019654_090--Hb_034406_020 Hb_019654_090--Hb_000072_080 Hb_004951_040 Hb_004951_040 Hb_019654_090--Hb_004951_040 Hb_012753_160 Hb_012753_160 Hb_000072_080--Hb_012753_160 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_021409_030 Hb_021409_030 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680 Hb_168319_030 Hb_168319_030 Hb_000366_090--Hb_168319_030 Hb_000033_020 Hb_000033_020 Hb_000366_090--Hb_000033_020 Hb_000117_090 Hb_000117_090 Hb_000366_090--Hb_000117_090 Hb_000366_090--Hb_000019_060 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_004375_150 Hb_004375_150 Hb_000366_090--Hb_004375_150 Hb_001565_080 Hb_001565_080 Hb_000349_290--Hb_001565_080 Hb_000215_060 Hb_000215_060 Hb_000349_290--Hb_000215_060 Hb_000363_480 Hb_000363_480 Hb_000349_290--Hb_000363_480 Hb_000349_290--Hb_000905_180 Hb_011173_050 Hb_011173_050 Hb_000349_290--Hb_011173_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33944 1.19934 0.316788 0.632423 0.708886 1.63727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27907 4.85659 4.10374 1.42003 1.14323

CAGE analysis