Hb_007645_100

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig7645: 109878-114288
Sequence    

Annotation

kegg
ID rcu:RCOM_0089480
description hypothetical protein
nr
ID XP_012080641.1
description PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SL53
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0089480 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring fyve phd zinc finger superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57396: 109650-110715 , PASA_asmbl_57397: 109901-110718 , PASA_asmbl_57398: 111377-111861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_100 0.0 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
2 Hb_000731_270 0.0611068077 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
3 Hb_002217_250 0.0614797183 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002263_020 0.0629550489 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_003847_130 0.0639230109 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
6 Hb_005054_090 0.0702750643 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
7 Hb_000347_070 0.0727150707 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000053_040 0.0743724069 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
9 Hb_001008_120 0.0744822536 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
10 Hb_009270_020 0.0753444634 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
11 Hb_004963_030 0.0755198536 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_021443_040 0.0763378692 - - acc synthase, putative [Ricinus communis]
13 Hb_000138_100 0.0765202161 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
14 Hb_000441_120 0.0777327012 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_004254_090 0.0781555771 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
16 Hb_000792_010 0.0791846892 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
17 Hb_002592_060 0.079405754 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003375_070 0.0798016215 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
19 Hb_002518_260 0.0800389337 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
20 Hb_028912_050 0.0804410157 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007645_100 Hb_007645_100 Hb_000731_270 Hb_000731_270 Hb_007645_100--Hb_000731_270 Hb_002217_250 Hb_002217_250 Hb_007645_100--Hb_002217_250 Hb_002263_020 Hb_002263_020 Hb_007645_100--Hb_002263_020 Hb_003847_130 Hb_003847_130 Hb_007645_100--Hb_003847_130 Hb_005054_090 Hb_005054_090 Hb_007645_100--Hb_005054_090 Hb_000347_070 Hb_000347_070 Hb_007645_100--Hb_000347_070 Hb_000731_270--Hb_000347_070 Hb_000207_180 Hb_000207_180 Hb_000731_270--Hb_000207_180 Hb_006420_040 Hb_006420_040 Hb_000731_270--Hb_006420_040 Hb_004254_090 Hb_004254_090 Hb_000731_270--Hb_004254_090 Hb_000441_120 Hb_000441_120 Hb_000731_270--Hb_000441_120 Hb_002217_250--Hb_002263_020 Hb_000347_430 Hb_000347_430 Hb_002217_250--Hb_000347_430 Hb_003517_040 Hb_003517_040 Hb_002217_250--Hb_003517_040 Hb_002732_040 Hb_002732_040 Hb_002217_250--Hb_002732_040 Hb_000340_530 Hb_000340_530 Hb_002217_250--Hb_000340_530 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_002263_020--Hb_003517_040 Hb_004109_080 Hb_004109_080 Hb_002263_020--Hb_004109_080 Hb_007632_240 Hb_007632_240 Hb_003847_130--Hb_007632_240 Hb_001442_040 Hb_001442_040 Hb_003847_130--Hb_001442_040 Hb_000466_140 Hb_000466_140 Hb_003847_130--Hb_000466_140 Hb_003847_130--Hb_002592_060 Hb_004410_030 Hb_004410_030 Hb_003847_130--Hb_004410_030 Hb_000792_010 Hb_000792_010 Hb_005054_090--Hb_000792_010 Hb_003029_110 Hb_003029_110 Hb_005054_090--Hb_003029_110 Hb_000621_010 Hb_000621_010 Hb_005054_090--Hb_000621_010 Hb_000029_300 Hb_000029_300 Hb_005054_090--Hb_000029_300 Hb_000032_520 Hb_000032_520 Hb_005054_090--Hb_000032_520 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.8987 7.51549 5.59803 6.73426 11.4141 8.65045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.45424 6.80132 6.96346 9.02435 11.4745

CAGE analysis