Hb_007659_010

Information

Type -
Description -
Location Contig7659: 14368-15105
Sequence    

Annotation

kegg
ID pmum:103324041
description pentatricopeptide repeat-containing protein At4g14820
nr
ID XP_012069653.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
swissprot
ID O23337
description Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
trembl
ID A0A067L6S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02188 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007659_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
2 Hb_002224_050 0.0752659122 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
3 Hb_041476_010 0.1166232149 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
4 Hb_007044_280 0.1277440987 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
5 Hb_018591_040 0.1419021411 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
6 Hb_000541_010 0.1878488365 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_003245_010 0.1916282483 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_165958_010 0.1919550639 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_006995_020 0.2163214449 - - hypothetical protein glysoja_017339 [Glycine soja]
10 Hb_117252_010 0.2258905635 - - hypothetical protein [Pseudomonas tolaasii]
11 Hb_004041_010 0.2328634098 - - conserved hypothetical protein [Ricinus communis]
12 Hb_042795_010 0.2361203551 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_053575_010 0.2451413199 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_003401_040 0.2492015247 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
15 Hb_011114_050 0.253184313 - - -
16 Hb_013874_010 0.2557471594 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
17 Hb_095399_010 0.2565842831 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
18 Hb_017279_030 0.258964116 - - -
19 Hb_028105_020 0.2698370991 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
20 Hb_162933_010 0.270986705 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_007659_010 Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_007659_010--Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_007659_010--Hb_041476_010 Hb_007044_280 Hb_007044_280 Hb_007659_010--Hb_007044_280 Hb_018591_040 Hb_018591_040 Hb_007659_010--Hb_018591_040 Hb_000541_010 Hb_000541_010 Hb_007659_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_007659_010--Hb_003245_010 Hb_002224_050--Hb_041476_010 Hb_002224_050--Hb_000541_010 Hb_002224_050--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_002224_050--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_002224_050--Hb_117252_010 Hb_041476_010--Hb_000541_010 Hb_041476_010--Hb_003245_010 Hb_041476_010--Hb_165958_010 Hb_041476_010--Hb_117252_010 Hb_007044_280--Hb_018591_040 Hb_006995_020 Hb_006995_020 Hb_007044_280--Hb_006995_020 Hb_007044_280--Hb_002224_050 Hb_007044_280--Hb_041476_010 Hb_004041_010 Hb_004041_010 Hb_007044_280--Hb_004041_010 Hb_018591_040--Hb_006995_020 Hb_018591_040--Hb_002224_050 Hb_018591_040--Hb_041476_010 Hb_018591_040--Hb_004041_010 Hb_000541_010--Hb_003245_010 Hb_000541_010--Hb_165958_010 Hb_000541_010--Hb_117252_010 Hb_042795_010 Hb_042795_010 Hb_000541_010--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_000541_010--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_000541_010--Hb_003401_040 Hb_003245_010--Hb_165958_010 Hb_003245_010--Hb_117252_010 Hb_003245_010--Hb_042795_010 Hb_003245_010--Hb_053575_010 Hb_003245_010--Hb_003401_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.366777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.317872

CAGE analysis