Hb_007666_020

Information

Type -
Description -
Location Contig7666: 4947-12753
Sequence    

Annotation

kegg
ID rcu:RCOM_0902770
description alkaline phytoceramidase, putative
nr
ID XP_002518399.1
description alkaline phytoceramidase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXD0
description Alkaline phytoceramidase, putative OS=Ricinus communis GN=RCOM_0902770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57413: 5409-5813 , PASA_asmbl_57415: 8335-8707 , PASA_asmbl_57416: 9826-10365 , PASA_asmbl_57417: 10663-10794 , PASA_asmbl_57419: 11440-12000 , PASA_asmbl_57420: 12162-12496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007666_020 0.0 - - alkaline phytoceramidase, putative [Ricinus communis]
2 Hb_000922_270 0.076741848 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
3 Hb_005618_040 0.0883173404 - - -
4 Hb_002540_030 0.0888349795 - - hypothetical protein 32 [Hevea brasiliensis]
5 Hb_002527_070 0.0961256731 - - axonemal dynein light chain, putative [Ricinus communis]
6 Hb_001711_030 0.0990374918 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
7 Hb_002411_200 0.1001275156 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001329_210 0.1010961 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
9 Hb_000086_570 0.1043541616 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
10 Hb_003408_020 0.1050881731 - - hypothetical protein RCOM_0453040 [Ricinus communis]
11 Hb_000091_090 0.1062202235 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
12 Hb_001278_050 0.1063307828 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
13 Hb_000051_040 0.1073144885 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
14 Hb_014720_080 0.1104824993 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
15 Hb_021650_030 0.111761262 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
16 Hb_002936_050 0.114936607 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
17 Hb_002282_020 0.1162723154 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
18 Hb_000983_100 0.1165572795 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
19 Hb_001863_480 0.1171151523 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
20 Hb_002897_060 0.1173667349 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]

Gene co-expression network

sample Hb_007666_020 Hb_007666_020 Hb_000922_270 Hb_000922_270 Hb_007666_020--Hb_000922_270 Hb_005618_040 Hb_005618_040 Hb_007666_020--Hb_005618_040 Hb_002540_030 Hb_002540_030 Hb_007666_020--Hb_002540_030 Hb_002527_070 Hb_002527_070 Hb_007666_020--Hb_002527_070 Hb_001711_030 Hb_001711_030 Hb_007666_020--Hb_001711_030 Hb_002411_200 Hb_002411_200 Hb_007666_020--Hb_002411_200 Hb_003408_020 Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080 Hb_000261_460 Hb_000261_460 Hb_005618_040--Hb_000261_460 Hb_025087_010 Hb_025087_010 Hb_005618_040--Hb_025087_010 Hb_001153_200 Hb_001153_200 Hb_005618_040--Hb_001153_200 Hb_005618_040--Hb_000051_040 Hb_005618_040--Hb_000922_270 Hb_002540_030--Hb_014720_080 Hb_002540_030--Hb_010172_070 Hb_002540_030--Hb_000922_270 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_000861_040 Hb_000861_040 Hb_002527_070--Hb_000861_040 Hb_002527_070--Hb_001711_030 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_000983_100 Hb_000983_100 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_001863_480 Hb_001863_480 Hb_001711_030--Hb_001863_480 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_001439_170 Hb_001439_170 Hb_001711_030--Hb_001439_170 Hb_021650_030 Hb_021650_030 Hb_002411_200--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_002411_200--Hb_000086_570 Hb_000091_090 Hb_000091_090 Hb_002411_200--Hb_000091_090 Hb_002411_200--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0855 7.90557 3.55442 4.57174 13.6333 16.765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.6399 30.2072 34.8337 8.43015 0.920348

CAGE analysis