Hb_007666_040

Information

Type -
Description -
Location Contig7666: 16839-21019
Sequence    

Annotation

kegg
ID rcu:RCOM_0823080
description Ent-kaurene synthase B, chloroplast precursor, putative (EC:4.2.3.19)
nr
ID XP_012091243.1
description PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q39548
description Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1
trembl
ID A0A067JD40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21144 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-kaurene synthase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57422: 17295-17824 , PASA_asmbl_57423: 18452-18812 , PASA_asmbl_57424: 19098-19832 , PASA_asmbl_57425: 20104-20849 , PASA_asmbl_57426: 20396-20678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007666_040 0.0 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
2 Hb_003117_060 0.0699587878 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
3 Hb_003385_090 0.0878664264 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
4 Hb_000535_030 0.0906128256 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
5 Hb_012053_030 0.0999679715 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
6 Hb_001114_210 0.1073611021 - - PREDICTED: periaxin [Jatropha curcas]
7 Hb_001489_030 0.1093471019 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
8 Hb_008053_070 0.1103597578 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
9 Hb_000116_390 0.1107688838 - - Mlo protein [Hevea brasiliensis]
10 Hb_005000_220 0.1148812653 - - gulonolactone oxidase, putative [Ricinus communis]
11 Hb_032651_060 0.1167613124 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000322_200 0.1172923105 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
13 Hb_001376_040 0.1182800226 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
14 Hb_017987_040 0.1198277182 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
15 Hb_000031_130 0.1199647057 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
16 Hb_151364_010 0.1234539618 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_008616_020 0.1235479995 - - unnamed protein product [Vitis vinifera]
18 Hb_004619_010 0.1248723282 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_008503_020 0.1288966882 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_000300_570 0.1289978163 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]

Gene co-expression network

sample Hb_007666_040 Hb_007666_040 Hb_003117_060 Hb_003117_060 Hb_007666_040--Hb_003117_060 Hb_003385_090 Hb_003385_090 Hb_007666_040--Hb_003385_090 Hb_000535_030 Hb_000535_030 Hb_007666_040--Hb_000535_030 Hb_012053_030 Hb_012053_030 Hb_007666_040--Hb_012053_030 Hb_001114_210 Hb_001114_210 Hb_007666_040--Hb_001114_210 Hb_001489_030 Hb_001489_030 Hb_007666_040--Hb_001489_030 Hb_003636_010 Hb_003636_010 Hb_003117_060--Hb_003636_010 Hb_003117_060--Hb_000535_030 Hb_118777_010 Hb_118777_010 Hb_003117_060--Hb_118777_010 Hb_003117_060--Hb_003385_090 Hb_106969_010 Hb_106969_010 Hb_003117_060--Hb_106969_010 Hb_003385_090--Hb_000535_030 Hb_032651_060 Hb_032651_060 Hb_003385_090--Hb_032651_060 Hb_001080_040 Hb_001080_040 Hb_003385_090--Hb_001080_040 Hb_049562_010 Hb_049562_010 Hb_003385_090--Hb_049562_010 Hb_003385_090--Hb_001114_210 Hb_000535_030--Hb_032651_060 Hb_000535_030--Hb_001114_210 Hb_000535_030--Hb_001080_040 Hb_000300_570 Hb_000300_570 Hb_012053_030--Hb_000300_570 Hb_000265_010 Hb_000265_010 Hb_012053_030--Hb_000265_010 Hb_008053_070 Hb_008053_070 Hb_012053_030--Hb_008053_070 Hb_000185_060 Hb_000185_060 Hb_012053_030--Hb_000185_060 Hb_003086_200 Hb_003086_200 Hb_012053_030--Hb_003086_200 Hb_001376_040 Hb_001376_040 Hb_001114_210--Hb_001376_040 Hb_000031_130 Hb_000031_130 Hb_001114_210--Hb_000031_130 Hb_001114_210--Hb_049562_010 Hb_005649_120 Hb_005649_120 Hb_001114_210--Hb_005649_120 Hb_001114_210--Hb_001080_040 Hb_008062_020 Hb_008062_020 Hb_001114_210--Hb_008062_020 Hb_000043_080 Hb_000043_080 Hb_001489_030--Hb_000043_080 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_001489_030--Hb_000300_570 Hb_002917_030 Hb_002917_030 Hb_001489_030--Hb_002917_030 Hb_001489_030--Hb_000265_010 Hb_001489_030--Hb_012053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0282708 39.9965 1.5074 0.928068 0.00632413 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157602 0.0450988 0.0431436 29.9369 1.08273

CAGE analysis