Hb_007668_020

Information

Type -
Description -
Location Contig7668: 16560-20606
Sequence    

Annotation

kegg
ID pop:POPTR_0010s25330g
description POPTRDRAFT_567845; hypothetical protein
nr
ID XP_012068491.1
description PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03158 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57428: 16976-51742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007668_020 0.0 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
2 Hb_001278_060 0.0612516645 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_005129_050 0.0721280612 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
4 Hb_000213_070 0.0746362264 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
5 Hb_003581_020 0.0751927918 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
6 Hb_003716_020 0.0753715108 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
7 Hb_000199_080 0.0759129224 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005000_270 0.081334644 - - unnamed protein product [Vitis vinifera]
9 Hb_009913_050 0.0833722385 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
10 Hb_006002_030 0.0850574664 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
11 Hb_007757_100 0.0874496685 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
12 Hb_002942_080 0.0914749042 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
13 Hb_000849_100 0.0923317282 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
14 Hb_078477_040 0.0940766896 - - nuclear movement protein nudc, putative [Ricinus communis]
15 Hb_004218_070 0.0956536491 - - annexin [Manihot esculenta]
16 Hb_001196_070 0.0960127208 - - nucleolar protein nop56, putative [Ricinus communis]
17 Hb_000329_490 0.0966375352 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
18 Hb_007668_040 0.0996779404 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
19 Hb_006114_020 0.1011832998 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002159_040 0.1012286285 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]

Gene co-expression network

sample Hb_007668_020 Hb_007668_020 Hb_001278_060 Hb_001278_060 Hb_007668_020--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_007668_020--Hb_005129_050 Hb_000213_070 Hb_000213_070 Hb_007668_020--Hb_000213_070 Hb_003581_020 Hb_003581_020 Hb_007668_020--Hb_003581_020 Hb_003716_020 Hb_003716_020 Hb_007668_020--Hb_003716_020 Hb_000199_080 Hb_000199_080 Hb_007668_020--Hb_000199_080 Hb_006002_030 Hb_006002_030 Hb_001278_060--Hb_006002_030 Hb_001278_060--Hb_000213_070 Hb_001278_060--Hb_005129_050 Hb_001433_190 Hb_001433_190 Hb_001278_060--Hb_001433_190 Hb_078477_040 Hb_078477_040 Hb_001278_060--Hb_078477_040 Hb_001301_210 Hb_001301_210 Hb_005129_050--Hb_001301_210 Hb_002883_010 Hb_002883_010 Hb_005129_050--Hb_002883_010 Hb_005129_050--Hb_001433_190 Hb_001196_070 Hb_001196_070 Hb_005129_050--Hb_001196_070 Hb_000213_070--Hb_006002_030 Hb_000331_190 Hb_000331_190 Hb_000213_070--Hb_000331_190 Hb_002675_060 Hb_002675_060 Hb_000213_070--Hb_002675_060 Hb_000213_070--Hb_078477_040 Hb_003581_020--Hb_003716_020 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_007668_040 Hb_007668_040 Hb_003581_020--Hb_007668_040 Hb_004881_050 Hb_004881_050 Hb_003581_020--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_003581_020--Hb_000372_040 Hb_011497_010 Hb_011497_010 Hb_003716_020--Hb_011497_010 Hb_005000_270 Hb_005000_270 Hb_003716_020--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_003716_020--Hb_000849_100 Hb_003716_020--Hb_006002_030 Hb_007757_100 Hb_007757_100 Hb_000199_080--Hb_007757_100 Hb_079326_010 Hb_079326_010 Hb_000199_080--Hb_079326_010 Hb_000199_080--Hb_003581_020 Hb_008406_140 Hb_008406_140 Hb_000199_080--Hb_008406_140 Hb_002159_040 Hb_002159_040 Hb_000199_080--Hb_002159_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.0291 20.0425 18.1117 16.5771 77.1446 94.8595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0878 12.9214 10.9715 22.6483 9.97649

CAGE analysis