Hb_007668_040

Information

Type -
Description -
Location Contig7668: 50091-51578
Sequence    

Annotation

kegg
ID mdm:103409082
description uncharacterized LOC103409082
nr
ID XP_008346126.1
description PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A068V5D5
description Coffea canephora DH200=94 genomic scaffold, scaffold_113 OS=Coffea canephora GN=GSCOC_T00016943001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57428: 16976-51742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007668_040 0.0 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
2 Hb_002942_080 0.0364696001 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
3 Hb_012132_040 0.0640937984 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
4 Hb_000364_060 0.0650854157 - - JHL03K20.4 [Jatropha curcas]
5 Hb_001341_050 0.0685706339 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
6 Hb_024990_010 0.0735964106 - - PREDICTED: la protein 1 [Jatropha curcas]
7 Hb_003006_060 0.0780900067 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
8 Hb_004450_010 0.0822097087 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
9 Hb_004198_010 0.0823987297 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
10 Hb_003581_020 0.0848323903 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
11 Hb_002044_060 0.0854767614 - - elongation factor ts, putative [Ricinus communis]
12 Hb_010423_020 0.0864025765 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
13 Hb_009913_050 0.0891118025 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
14 Hb_001221_040 0.0902811694 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
15 Hb_005214_060 0.09079823 - - catalytic, putative [Ricinus communis]
16 Hb_000956_030 0.0910134811 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
17 Hb_000424_230 0.0913484163 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
18 Hb_007643_050 0.09285415 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_004195_280 0.0931822967 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
20 Hb_002272_180 0.0942106578 - - hypothetical protein JCGZ_23380 [Jatropha curcas]

Gene co-expression network

sample Hb_007668_040 Hb_007668_040 Hb_002942_080 Hb_002942_080 Hb_007668_040--Hb_002942_080 Hb_012132_040 Hb_012132_040 Hb_007668_040--Hb_012132_040 Hb_000364_060 Hb_000364_060 Hb_007668_040--Hb_000364_060 Hb_001341_050 Hb_001341_050 Hb_007668_040--Hb_001341_050 Hb_024990_010 Hb_024990_010 Hb_007668_040--Hb_024990_010 Hb_003006_060 Hb_003006_060 Hb_007668_040--Hb_003006_060 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_002942_080--Hb_003006_060 Hb_002675_060 Hb_002675_060 Hb_002942_080--Hb_002675_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_002942_080--Hb_024990_010 Hb_012132_040--Hb_001341_050 Hb_012132_040--Hb_000364_060 Hb_012132_040--Hb_002942_080 Hb_003581_020 Hb_003581_020 Hb_012132_040--Hb_003581_020 Hb_032496_030 Hb_032496_030 Hb_012132_040--Hb_032496_030 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_004198_010 Hb_004198_010 Hb_000364_060--Hb_004198_010 Hb_000364_060--Hb_001341_050 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_001341_050--Hb_002942_080 Hb_001341_050--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_001341_050--Hb_003434_060 Hb_010423_020 Hb_010423_020 Hb_001341_050--Hb_010423_020 Hb_000331_190 Hb_000331_190 Hb_024990_010--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_024990_010--Hb_000531_090 Hb_125092_020 Hb_125092_020 Hb_024990_010--Hb_125092_020 Hb_000340_160 Hb_000340_160 Hb_024990_010--Hb_000340_160 Hb_001221_040 Hb_001221_040 Hb_024990_010--Hb_001221_040 Hb_004678_060 Hb_004678_060 Hb_003006_060--Hb_004678_060 Hb_000104_080 Hb_000104_080 Hb_003006_060--Hb_000104_080 Hb_003006_060--Hb_010423_020 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_009265_080 Hb_009265_080 Hb_003006_060--Hb_009265_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.2668 18.0107 26.1978 19.5132 66.398 88.9619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.4739 24.917 15.8455 27.9072 13.848

CAGE analysis