Hb_007672_030

Information

Type transcription factor
Description TF Family: LOB
Location Contig7672: 47859-48800
Sequence    

Annotation

kegg
ID vvi:100854040
description LOB domain-containing protein 36-like
nr
ID KHG26276.1
description LOB domain-containing 36 -like protein [Gossypium arboreum]
swissprot
ID Q9FKZ3
description LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1
trembl
ID A0A0B0PS92
description LOB domain-containing 36-like protein OS=Gossypium arboreum GN=F383_00956 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007672_030 0.0 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
2 Hb_014720_090 0.2327796897 - - -
3 Hb_002998_070 0.237773847 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
4 Hb_000732_210 0.2529259 - - hexose transporter 1 [Hevea brasiliensis]
5 Hb_021576_020 0.2572389589 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
6 Hb_000042_220 0.2741598237 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
7 Hb_011472_010 0.2788097229 - - PREDICTED: protein yippee-like [Jatropha curcas]
8 Hb_000487_120 0.2913514104 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002783_110 0.2929185436 - - Zeamatin precursor, putative [Ricinus communis]
10 Hb_005306_010 0.295080268 - - -
11 Hb_003464_070 0.3013866454 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
12 Hb_000086_290 0.3037730993 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
13 Hb_075247_010 0.3064368278 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
14 Hb_067793_010 0.3069748293 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
15 Hb_001638_230 0.3078441462 - - RNA-binding region-containing protein, putative [Ricinus communis]
16 Hb_032972_010 0.3123548273 - - Glycolipid transfer protein, putative [Ricinus communis]
17 Hb_000457_210 0.3124939442 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
18 Hb_001141_290 0.3132235819 - - -
19 Hb_000926_100 0.3157674491 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
20 Hb_003878_050 0.3160710804 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]

Gene co-expression network

sample Hb_007672_030 Hb_007672_030 Hb_014720_090 Hb_014720_090 Hb_007672_030--Hb_014720_090 Hb_002998_070 Hb_002998_070 Hb_007672_030--Hb_002998_070 Hb_000732_210 Hb_000732_210 Hb_007672_030--Hb_000732_210 Hb_021576_020 Hb_021576_020 Hb_007672_030--Hb_021576_020 Hb_000042_220 Hb_000042_220 Hb_007672_030--Hb_000042_220 Hb_011472_010 Hb_011472_010 Hb_007672_030--Hb_011472_010 Hb_001141_290 Hb_001141_290 Hb_014720_090--Hb_001141_290 Hb_003055_150 Hb_003055_150 Hb_014720_090--Hb_003055_150 Hb_163206_010 Hb_163206_010 Hb_014720_090--Hb_163206_010 Hb_000866_250 Hb_000866_250 Hb_014720_090--Hb_000866_250 Hb_094890_010 Hb_094890_010 Hb_014720_090--Hb_094890_010 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_003464_070 Hb_003464_070 Hb_002998_070--Hb_003464_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_000450_160 Hb_000450_160 Hb_002998_070--Hb_000450_160 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330 Hb_162275_020 Hb_162275_020 Hb_000732_210--Hb_162275_020 Hb_130719_010 Hb_130719_010 Hb_000732_210--Hb_130719_010 Hb_000117_100 Hb_000117_100 Hb_000732_210--Hb_000117_100 Hb_000614_170 Hb_000614_170 Hb_000732_210--Hb_000614_170 Hb_000297_020 Hb_000297_020 Hb_000732_210--Hb_000297_020 Hb_002217_230 Hb_002217_230 Hb_000732_210--Hb_002217_230 Hb_001554_010 Hb_001554_010 Hb_021576_020--Hb_001554_010 Hb_021576_020--Hb_002998_070 Hb_007904_240 Hb_007904_240 Hb_021576_020--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_021576_020--Hb_000069_770 Hb_005306_010 Hb_005306_010 Hb_021576_020--Hb_005306_010 Hb_000926_100 Hb_000926_100 Hb_021576_020--Hb_000926_100 Hb_001504_140 Hb_001504_140 Hb_000042_220--Hb_001504_140 Hb_000042_220--Hb_011472_010 Hb_002835_430 Hb_002835_430 Hb_000042_220--Hb_002835_430 Hb_001712_040 Hb_001712_040 Hb_000042_220--Hb_001712_040 Hb_144484_010 Hb_144484_010 Hb_000042_220--Hb_144484_010 Hb_012163_020 Hb_012163_020 Hb_011472_010--Hb_012163_020 Hb_011472_010--Hb_000732_210 Hb_007943_190 Hb_007943_190 Hb_011472_010--Hb_007943_190 Hb_001377_420 Hb_001377_420 Hb_011472_010--Hb_001377_420 Hb_000922_120 Hb_000922_120 Hb_011472_010--Hb_000922_120 Hb_011472_010--Hb_001504_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.280052 0 0.733214 2.62753 0 0.063012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.327731 1.20281 2.44108 1.52252 0

CAGE analysis